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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18410-RA through 18771 annotations produced 1 hits



(CG18410):

Annotation Number : CG18410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039226
Gbrowse : chr3R:20623178-20625390 (-) // 100.0 //
Probeset : 1623080_at
Accessions : protein= NP_651287;, nucleotide= NM_143030;
FlyMine data for FBgn0039226.
BDGP gene expression has embryonic in situ data for CG18410: 20 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0039226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 54 of 4 0.20Down
Head209 ± 124 of 4 1.40Up
Eye98 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion44 ± 54 of 4 0.30Down
Salivary gland69 ± 44 of 4 0.46Down
Crop566 ± 44 of 4 3.80Up
Midgut62 ± 34 of 4 0.40Down
Tubule61 ± 24 of 4 0.40Down
Hindgut699 ± 124 of 4 4.60Up
Heart266 ± 274 of 4 1.77Up
Fat body122 ± 194 of 4 0.82None
Ovary30 ± 04 of 4 0.20Down
Testis339 ± 134 of 4 2.30Up
Male accessory glands150 ± 94 of 4 1.00None
Virgin spermatheca95 ± 34 of 4 0.63Down
Mated spermatheca155 ± 104 of 4 1.03None
Adult carcass255 ± 144 of 4 1.70Up
Larval CNS57 ± 114 of 4 0.38Down
Larval Salivary gland94 ± 94 of 4 0.63Down
Larval midgut68 ± 24 of 4 0.45Down
Larval tubule28 ± 44 of 4 0.20Down
Larval hindgut761 ± 764 of 4 5.06Up
Larval fat body53 ± 184 of 4 0.40Down
Larval trachea786 ± 1384 of 4 5.22Up
Larval carcass295 ± 244 of 4 1.97Up
S2 cells (growing)209 ± 134 of 4 1.39Up
Whole fly150 ± 104 of 4

Looking for CG18410-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime