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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18412-RA through 18771 annotations produced 1 hits

Polyhomeotic (ph-p):

Annotation Number : CG18412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004861
Gbrowse : chrX:2020236-2030578 (-) // 100.0 //
Probeset : 1623441_at
Accessions : protein= NP_001162644; /// NP_476871;, nucleotide= NM_001169173; /// NM_057523;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotati
FlyMine data for FBgn0004861.
BioGrid reports that CG18412 interacts with CG4195 CG18417 CG3187 CG32772 CG5212 CG5733 CG8127 CG14941 CG6502 CG10917 CG4264 CG4264 CG4087 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG9495 CG9495 CG8651 CG8651 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG3757 CG3757 CG6464 CG2125 CG16987 CG5229 CG2530 CG9696 CG1616 CG7425 CG7425 CG5738 CG5738 CG3895 CG3895 CG3895 CG3895 CG3895 CG3895 CG10334 CG8573 CG6889 CG6889 CG10897 .
TRiP has 3 RNAi stocks for FBgn0004861 available for purchase.
VDRC has 5 RNAi stocks for FBgn0004861 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain285 84 of 4 4.80Up
Head129 84 of 4 2.20Up
Eye216 114 of 4 3.61Up
Thoracicoabdominal ganglion197 104 of 4 3.30Up
Salivary gland186 164 of 4 3.11Up
Crop163 64 of 4 2.70Up
Midgut85 74 of 4 1.40Up
Tubule70 14 of 4 1.20Up
Hindgut97 24 of 4 1.60Up
Heart100 34 of 4 1.67Up
Fat body62 94 of 4 1.04None
Ovary34 14 of 4 0.60Down
Testis16 24 of 4 0.30Down
Male accessory glands126 64 of 4 2.10Up
Virgin spermatheca57 24 of 4 0.95None
Mated spermatheca72 44 of 4 1.22None
Adult carcass88 34 of 4 1.50Up
Larval CNS663 254 of 411.07Up
Larval Salivary gland265 94 of 4 4.43Up
Larval midgut69 54 of 4 1.15None
Larval tubule87 14 of 4 1.50Up
Larval hindgut88 34 of 4 1.47Up
Larval fat body53 74 of 4 0.90None
Larval trachea289 314 of 4 4.82Up
Larval carcass106 124 of 4 1.78Up
S2 cells (growing)67 74 of 4 1.12None
Whole fly60 64 of 4

Looking for CG18412-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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