Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18418-RA through 18771 annotations produced 1 hits



(CG18418):

Annotation Number : CG18418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035568
Gbrowse : chr3L:4688928-4690070 (-) // 100.0 //
Probeset : 1627208_at
Accessions : protein= NP_647924;, nucleotide= NM_139667;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
Interpro : 0005488 // binding // inferred from electronic annotation /// 0015367 // oxoglutarate:malate antiporter activity // infe
FlyMine data for FBgn0035568.
Homophila reports that CG18418 is a close match (5e-11) to human gene PHC;SLC25A3 (NP_998776), a gene associated with Micochondrial phosphate carrier deficiency, 610773 (3).
VDRC has 3 RNAi stocks for FBgn0035568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.00Down
Head4 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion7 11 of 4 0.10Down
Salivary gland32 51 of 4 0.25Down
Crop6 20 of 4 0.00Down
Midgut7 10 of 4 0.10Down
Tubule13 01 of 4 0.10Down
Hindgut16 24 of 4 0.10Down
Heart2 10 of 4 0.02Down
Fat body15 61 of 4 0.12Down
Ovary4 11 of 4 0.00Down
Testis1184 154 of 4 9.10Up
Male accessory glands10 30 of 4 0.10Down
Virgin spermatheca32 14 of 4 0.25Down
Mated spermatheca41 153 of 4 0.32Down
Adult carcass9 00 of 4 0.10Down
Larval CNS8 03 of 4 0.06Down
Larval Salivary gland8 10 of 4 0.06Down
Larval midgut10 10 of 4 0.08Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut5 10 of 4 0.04Down
Larval fat body172 854 of 4 1.30None
Larval trachea3 51 of 4 0.03Down
Larval carcass2 00 of 4 0.02Down
S2 cells (growing)4 10 of 4 0.04Down
Whole fly130 54 of 4

Looking for CG18418-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime