FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1842-RA through 18771 annotations produced 1 hits

dynein-related heavy chain polypeptide (Dhc98D):

Annotation Number : CG1842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013813
Gbrowse : chr3R:24312674-24345043 (+) // 100.0 //
Probeset : 1640442_at
Accessions : protein= NP_001163759; /// NP_524541;, nucleotide= NM_001170288; /// NM_079817;
Pathway : 0005858 // axonemal dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule associa
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0003777 // microtubule motor activity
FlyMine data for FBgn0013813.
Homophila reports that CG1842 is a close match (0) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 1 RNAi stocks for FBgn0013813 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.40	None
Head	4 ± 1	0 of 4	0.30	None
Eye	1 ± 1	0 of 4	0.17	Down
Thoracicoabdominal ganglion	16 ± 2	2 of 4	1.40	None
Salivary gland	9 ± 5	0 of 4	0.84	None
Crop	5 ± 1	0 of 4	0.40	None
Midgut	2 ± 0	0 of 4	0.20	Down
Tubule	9 ± 1	0 of 4	0.80	None
Hindgut	4 ± 1	0 of 4	0.40	None
Heart	1 ± 0	0 of 4	0.13	Down
Fat body	5 ± 3	0 of 4	0.46	None
Ovary	4 ± 1	0 of 4	0.40	None
Testis	167 ± 8	4 of 4	14.30	Up
Male accessory glands	11 ± 2	0 of 4	0.90	None
Virgin spermatheca	5 ± 1	0 of 4	0.43	None
Mated spermatheca	6 ± 1	0 of 4	0.57	None
Adult carcass	6 ± 2	0 of 4	0.60	None
Larval CNS	1 ± 0	0 of 4	0.12	Down
Larval Salivary gland	2 ± 0	0 of 4	0.17	Down
Larval midgut	4 ± 1	0 of 4	0.34	None
Larval tubule	9 ± 0	1 of 4	0.80	None
Larval hindgut	3 ± 0	0 of 4	0.29	Down
Larval fat body	19 ± 9	2 of 4	1.70	None
Larval trachea	2 ± 1	0 of 4	0.21	Down
Larval carcass	3 ± 1	0 of 4	0.30	Down
S2 cells (growing)	4 ± 1	0 of 4	0.36	None
Whole fly	11 ± 2	2 of 4

Looking for CG1842-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720