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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18426-RA through 18771 annotations produced 1 hits



yantar (ytr):

Annotation Number : CG18426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021895
Gbrowse : chr2R:19734692-19738619 (-) // 100.0 //
Probeset : 1623384_at
Accessions : protein= NP_611839;, nucleotide= NM_137995;
Pathway : via spliceosome // inferred by curator /// 0030097 // hemopoiesis // non-traceable author statement /// 0042386 // hemo
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay
FlyMine data for FBgn0021895.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain978 ± 364 of 4 2.30Up
Head508 ± 414 of 4 1.20None
Eye373 ± 54 of 4 0.88None
Thoracicoabdominal ganglion607 ± 164 of 4 1.40Up
Salivary gland452 ± 154 of 4 1.07None
Crop407 ± 204 of 4 1.00None
Midgut255 ± 54 of 4 0.60Down
Tubule249 ± 64 of 4 0.60Down
Hindgut258 ± 94 of 4 0.60Down
Heart232 ± 194 of 4 0.55Down
Fat body282 ± 304 of 4 0.67Down
Ovary703 ± 54 of 4 1.70Up
Testis137 ± 14 of 4 0.30Down
Male accessory glands715 ± 74 of 4 1.70Up
Virgin spermatheca476 ± 364 of 4 1.13None
Mated spermatheca518 ± 174 of 4 1.23Up
Adult carcass250 ± 54 of 4 0.60Down
Larval CNS1534 ± 1054 of 4 3.63Up
Larval Salivary gland901 ± 264 of 4 2.13Up
Larval midgut314 ± 74 of 4 0.74Down
Larval tubule276 ± 94 of 4 0.70Down
Larval hindgut393 ± 114 of 4 0.93None
Larval fat body457 ± 294 of 4 1.10None
Larval trachea528 ± 494 of 4 1.25Up
Larval carcass627 ± 144 of 4 1.48Up
S2 cells (growing)969 ± 214 of 4 2.29Up
Whole fly422 ± 224 of 4

Looking for CG18426-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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