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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18437-RA through 18771 annotations produced 1 hits



(CG18437):

Annotation Number : CG18437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039536
Gbrowse : chr3R:23488555-23502617 (+) // 99.99 //
Probeset : 1624411_at
Accessions : protein= NP_651577;, nucleotide= NM_143320;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005261 // cation channel activity // inferred from sequence or structural similarity
FlyMine data for FBgn0039536.
VDRC has 3 RNAi stocks for FBgn0039536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 144 of 450.70Up
Head17 ± 30 of 4 4.70Up
Eye10 ± 31 of 4 2.98None
Thoracicoabdominal ganglion147 ± 64 of 440.40Up
Salivary gland5 ± 30 of 4 1.42None
Crop2 ± 00 of 4 0.50None
Midgut1 ± 00 of 4 0.50None
Tubule1 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.30None
Heart0 ± 00 of 4 0.21None
Fat body1 ± 00 of 4 0.39None
Ovary1 ± 00 of 4 0.30None
Testis0 ± 00 of 4 0.20None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.27None
Mated spermatheca0 ± 00 of 4 0.21None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS32 ± 53 of 4 9.01Up
Larval Salivary gland1 ± 00 of 4 0.28None
Larval midgut1 ± 00 of 4 0.37None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.47None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea1 ± 00 of 4 0.29None
Larval carcass1 ± 00 of 4 0.43None
S2 cells (growing)1 ± 00 of 4 0.32None
Whole fly3 ± 10 of 4

Looking for CG18437-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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