FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1845-RA through 18771 annotations produced 1 hits

(Br140):

Annotation Number : CG1845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033155
Gbrowse : chr2R:3160036-3165580 (-) // 100.0 //
Probeset : 1631520_at
Accessions : protein= NP_610266;, nucleotide= NM_136422;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0033155.
BDGP gene expression has embryonic in situ data for CG1845: 20 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0033155 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033155 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 4	4 of 4	0.70	None
Head	41 ± 1	4 of 4	0.30	Down
Eye	43 ± 2	4 of 4	0.36	Down
Thoracicoabdominal ganglion	61 ± 4	4 of 4	0.50	Down
Salivary gland	97 ± 10	4 of 4	0.81	None
Crop	60 ± 4	4 of 4	0.50	Down
Midgut	36 ± 2	4 of 4	0.30	Down
Tubule	28 ± 1	4 of 4	0.20	Down
Hindgut	51 ± 3	4 of 4	0.40	Down
Heart	29 ± 2	4 of 4	0.24	Down
Fat body	33 ± 6	4 of 4	0.28	Down
Ovary	390 ± 13	4 of 4	3.20	Up
Testis	114 ± 14	4 of 4	0.90	None
Male accessory glands	40 ± 5	4 of 4	0.30	Down
Virgin spermatheca	23 ± 1	4 of 4	0.20	Down
Mated spermatheca	31 ± 3	4 of 4	0.26	Down
Adult carcass	49 ± 3	4 of 4	0.40	Down
Larval CNS	119 ± 8	4 of 4	0.98	None
Larval Salivary gland	100 ± 1	4 of 4	0.83	None
Larval midgut	49 ± 2	4 of 4	0.41	Down
Larval tubule	33 ± 1	4 of 4	0.30	Down
Larval hindgut	65 ± 1	4 of 4	0.54	Down
Larval fat body	38 ± 5	4 of 4	0.30	Down
Larval trachea	105 ± 12	4 of 4	0.88	None
Larval carcass	71 ± 4	4 of 4	0.59	Down
S2 cells (growing)	140 ± 3	4 of 4	1.16	None
Whole fly	120 ± 13	4 of 4

Looking for CG1845-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720