Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1845-RA through 18771 annotations produced 1 hits



(Br140):

Annotation Number : CG1845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033155
Gbrowse : chr2R:3160036-3165580 (-) // 100.0 //
Probeset : 1631520_at
Accessions : protein= NP_610266;, nucleotide= NM_136422;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0033155.
BDGP gene expression has embryonic in situ data for CG1845: 20 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0033155 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033155 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 44 of 4 0.70None
Head41 14 of 4 0.30Down
Eye43 24 of 4 0.36Down
Thoracicoabdominal ganglion61 44 of 4 0.50Down
Salivary gland97 104 of 4 0.81None
Crop60 44 of 4 0.50Down
Midgut36 24 of 4 0.30Down
Tubule28 14 of 4 0.20Down
Hindgut51 34 of 4 0.40Down
Heart29 24 of 4 0.24Down
Fat body33 64 of 4 0.28Down
Ovary390 134 of 4 3.20Up
Testis114 144 of 4 0.90None
Male accessory glands40 54 of 4 0.30Down
Virgin spermatheca23 14 of 4 0.20Down
Mated spermatheca31 34 of 4 0.26Down
Adult carcass49 34 of 4 0.40Down
Larval CNS119 84 of 4 0.98None
Larval Salivary gland100 14 of 4 0.83None
Larval midgut49 24 of 4 0.41Down
Larval tubule33 14 of 4 0.30Down
Larval hindgut65 14 of 4 0.54Down
Larval fat body38 54 of 4 0.30Down
Larval trachea105 124 of 4 0.88None
Larval carcass71 44 of 4 0.59Down
S2 cells (growing)140 34 of 4 1.16None
Whole fly120 134 of 4

Looking for CG1845-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime