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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18468-RA through 18771 annotations produced 1 hits



Lethal hybrid rescue (Lhr):

Annotation Number : CG18468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034217
Gbrowse : chr2R:13318555-13319728 (+) // 100.0 //
Probeset : 1636533_at
Accessions : protein= NP_611210;, nucleotide= NM_137366;
Pathway : 0000792 // heterochromatin // inferred from direct assay /// 0010369 // chromocenter // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0034217.
BioGrid reports that CG18468 interacts with CG8409 CG3891 .
TRiP has 1 RNAi stocks for FBgn0034217 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 4 0.80None
Head21 14 of 4 0.40Down
Eye20 24 of 4 0.39Down
Thoracicoabdominal ganglion37 24 of 4 0.70None
Salivary gland17 20 of 4 0.34Down
Crop17 14 of 4 0.30Down
Midgut14 10 of 4 0.30Down
Tubule10 21 of 4 0.20Down
Hindgut14 12 of 4 0.30Down
Heart7 02 of 4 0.15Down
Fat body9 40 of 4 0.18Down
Ovary104 44 of 4 2.00Up
Testis94 24 of 4 1.80Up
Male accessory glands47 34 of 4 0.90None
Virgin spermatheca9 00 of 4 0.19Down
Mated spermatheca11 10 of 4 0.23Down
Adult carcass17 31 of 4 0.30Down
Larval CNS65 54 of 4 1.27None
Larval Salivary gland23 24 of 4 0.45Down
Larval midgut8 10 of 4 0.17Down
Larval tubule9 10 of 4 0.20Down
Larval hindgut16 14 of 4 0.32Down
Larval fat body42 92 of 4 0.80None
Larval trachea27 64 of 4 0.53Down
Larval carcass19 13 of 4 0.39Down
S2 cells (growing)56 14 of 4 1.10None
Whole fly51 44 of 4

Looking for CG18468-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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