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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1847-RA through 18771 annotations produced 1 hits



(CG1847):

Annotation Number : CG1847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030345
Gbrowse : chrX:11763220-11765199 (+) // 100.0 //
Probeset : 1634000_a_at
Accessions : protein= NP_572758; /// NP_727574;, nucleotide= NM_132530; /// NM_167311;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0030345.
BDGP gene expression has embryonic in situ data for CG1847: 13 pix of staining in 5 body parts.
Homophila reports that CG1847 is a close match (4e-34) to human gene AIPL1;LCA4 (NP_001028226), a gene associated with Cone-rod dystrophy (3);Leber congenital amaurosis, 604393 (3);Retinitis pigmentosa, juvenile (3).
BioGrid reports that CG1847 interacts with CG4634 CG9986 .
TRiP has 1 RNAi stocks for FBgn0030345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 ± 74 of 4 1.70Up
Head184 ± 64 of 4 1.10Up
Eye182 ± 64 of 4 1.14None
Thoracicoabdominal ganglion357 ± 74 of 4 2.20Up
Salivary gland163 ± 64 of 4 1.01None
Crop215 ± 54 of 4 1.30Up
Midgut141 ± 14 of 4 0.90None
Tubule174 ± 54 of 4 1.10Up
Hindgut161 ± 34 of 4 1.00None
Heart124 ± 54 of 4 0.77Down
Fat body129 ± 134 of 4 0.80Down
Ovary369 ± 64 of 4 2.30Up
Testis101 ± 34 of 4 0.60Down
Male accessory glands163 ± 64 of 4 1.00None
Virgin spermatheca248 ± 174 of 4 1.54Up
Mated spermatheca240 ± 94 of 4 1.49Up
Adult carcass125 ± 24 of 4 0.80Down
Larval CNS222 ± 174 of 4 1.38Up
Larval Salivary gland151 ± 34 of 4 0.94None
Larval midgut103 ± 14 of 4 0.64Down
Larval tubule196 ± 34 of 4 1.20Up
Larval hindgut141 ± 44 of 4 0.88None
Larval fat body81 ± 94 of 4 0.50Down
Larval trachea105 ± 64 of 4 0.66Down
Larval carcass115 ± 74 of 4 0.71Down
S2 cells (growing)118 ± 24 of 4 0.74Down
Whole fly161 ± 64 of 4

Looking for CG1847-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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