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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18472-RA through 18771 annotations produced 1 hits



/// (CG14619 /// CG18472):

Annotation Number : CG18472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039463
Gbrowse : chr3R:22773589-22775275 (+) // 100.0 //
Probeset : 1637320_at
Accessions : protein= NP_608462; /// NP_651514; /// NP_728453; /// NP_728454; /// NP_728455; /// NP_728456;, nucleotide= NM_134618; /// NM_143257; /// NM_167775; /// NM_167776; /// NM_167777; /// NM_167778;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific pro
FlyMine data for FBgn0039463.
VDRC has 2 RNAi stocks for FBgn0039463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland8 40 of 4 0.25Down
Crop3 10 of 4 0.10Down
Midgut3 10 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart1 00 of 4 0.04Down
Fat body4 10 of 4 0.13Down
Ovary2 10 of 4 0.10Down
Testis409 244 of 412.30Up
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca4 00 of 4 0.13Down
Mated spermatheca8 10 of 4 0.24Down
Adult carcass8 10 of 4 0.20Down
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland4 10 of 4 0.12Down
Larval midgut8 10 of 4 0.25Down
Larval tubule5 00 of 4 0.20Down
Larval hindgut4 10 of 4 0.13Down
Larval fat body83 334 of 4 2.50None
Larval trachea6 31 of 4 0.19Down
Larval carcass7 10 of 4 0.22Down
S2 cells (growing)4 10 of 4 0.13Down
Whole fly33 14 of 4

Looking for CG18472-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime