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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18476-RA through 18771 annotations produced 1 hits



(CG18476):

Annotation Number : CG18476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037931
Gbrowse : chr3R:7500630-7503835 (-) // 100.0 //
Probeset : 1635319_at
Accessions : protein= NP_731615;, nucleotide= NM_169419;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037931.
Homophila reports that CG18476 is a close match (1e-11) to human gene HSAL1;SALL1;TBS (NP_002959), a gene associated with Townes-Brocks branchiootorenal-like syndrome, 107480 (3);Townes-Brocks syndrome, 107480 (3).
BioGrid reports that CG18476 interacts with CG4863 CG31762 .
TRiP has 1 RNAi stocks for FBgn0037931 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 31 of 4 2.70Up
Head11 ± 10 of 4 0.60None
Eye24 ± 24 of 4 1.22None
Thoracicoabdominal ganglion40 ± 51 of 4 2.00Up
Salivary gland22 ± 40 of 4 1.12None
Crop21 ± 00 of 4 1.10None
Midgut2 ± 00 of 4 0.10Down
Tubule5 ± 10 of 4 0.30Down
Hindgut18 ± 10 of 4 0.90None
Heart7 ± 21 of 4 0.39Down
Fat body1 ± 00 of 4 0.09Down
Ovary31 ± 02 of 4 1.60Up
Testis8 ± 30 of 4 0.40None
Male accessory glands18 ± 40 of 4 0.90None
Virgin spermatheca3 ± 00 of 4 0.16Down
Mated spermatheca4 ± 10 of 4 0.20Down
Adult carcass6 ± 00 of 4 0.30Down
Larval CNS32 ± 04 of 4 1.61Up
Larval Salivary gland17 ± 01 of 4 0.86None
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut5 ± 10 of 4 0.26Down
Larval fat body7 ± 10 of 4 0.30Down
Larval trachea12 ± 33 of 4 0.64None
Larval carcass3 ± 10 of 4 0.18Down
S2 cells (growing)20 ± 21 of 4 1.03None
Whole fly20 ± 30 of 4

Looking for CG18476-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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