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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18478-RA through 18771 annotations produced 1 hits



/// (CG18478 /// CG31827):

Annotation Number : CG18478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028517 /// FBgn0051827
Gbrowse : chr2L:15705235-15706220 (+) // 100.0 // /// chr2L:15670238-15671223 (+) // 100.0 // /// chrUextra:42142-43127 (-) // 100.0 //
Probeset : 1634726_s_at
Accessions : protein= NP_609764; /// NP_723923;, nucleotide= NM_135920; /// NM_165122;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0028517 /// FBgn0051827.
Homophila reports that CG18478 is a close match (1e-11) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.90None
Head2 10 of 4 0.90None
Eye2 10 of 4 0.79None
Thoracicoabdominal ganglion3 10 of 4 1.20None
Salivary gland7 10 of 4 2.50None
Crop4 10 of 4 1.50None
Midgut6 20 of 4 2.20None
Tubule3 00 of 4 1.10None
Hindgut1 00 of 4 0.60None
Heart2 10 of 4 0.69None
Fat body6 41 of 4 2.30None
Ovary3 00 of 4 1.10None
Testis3 10 of 4 1.30None
Male accessory glands6 10 of 4 2.10None
Virgin spermatheca5 10 of 4 1.79None
Mated spermatheca3 10 of 4 1.10None
Adult carcass6 30 of 4 2.30None
Larval CNS3 20 of 4 1.27None
Larval Salivary gland7 21 of 4 2.42None
Larval midgut3 00 of 4 1.31None
Larval tubule4 00 of 4 1.40None
Larval hindgut6 20 of 4 2.05None
Larval fat body87 64 of 429.90Up
Larval trachea7 40 of 4 2.39None
Larval carcass9 10 of 4 3.09Up
S2 cells (growing)1 00 of 4 0.40None
Whole fly2 10 of 4

Looking for CG18478-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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