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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18507-RA through 18771 annotations produced 2 hits



(CG18507):

Annotation Number : CG18507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028527
Gbrowse : chr2L:13665527-13669844 (+) // 100.0 //
Probeset : 1627961_a_at
Accessions : protein= NP_609666; /// NP_723827;, nucleotide= NM_135822; /// NM_165048;
FlyMine data for FBgn0028527.
BDGP gene expression has embryonic in situ data for BG:DS01368.1: 16 pix of staining in 15 body parts.
TRiP has 1 RNAi stocks for FBgn0028527 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 0.10Down
Head127 144 of 4 1.90Up
Eye218 174 of 4 3.22Up
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland1936 644 of 428.48Up
Crop264 54 of 4 3.90Up
Midgut15 04 of 4 0.20Down
Tubule93 244 of 4 1.40None
Hindgut509 194 of 4 7.50Up
Heart7 03 of 4 0.10Down
Fat body11 32 of 4 0.17Down
Ovary12 14 of 4 0.20Down
Testis93 44 of 4 1.40Up
Male accessory glands579 234 of 4 8.50Up
Virgin spermatheca43 04 of 4 0.65Down
Mated spermatheca51 64 of 4 0.76None
Adult carcass62 74 of 4 0.90None
Larval CNS8 11 of 4 0.13Down
Larval Salivary gland773 454 of 411.38Up
Larval midgut14 32 of 4 0.21Down
Larval tubule1117 1034 of 416.40Up
Larval hindgut294 104 of 4 4.32Up
Larval fat body20 53 of 4 0.30Down
Larval trachea286 254 of 4 4.22Up
Larval carcass127 34 of 4 1.88Up
S2 cells (growing)5 10 of 4 0.08Down
Whole fly68 34 of 4



(CG18507):

Annotation Number : CG18507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028527
Gbrowse : chr2L:13665527-13669844 (+) // 100.0 //
Probeset : 1638724_at
Accessions : protein= NP_609666; /// NP_723827;, nucleotide= NM_135822; /// NM_165048;
FlyMine data for FBgn0028527.
BDGP gene expression has embryonic in situ data for BG:DS01368.1: 16 pix of staining in 15 body parts.
TRiP has 1 RNAi stocks for FBgn0028527 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 03 of 4 0.20Down
Head83 124 of 4 1.40None
Eye216 134 of 4 3.58Up
Thoracicoabdominal ganglion14 04 of 4 0.20Down
Salivary gland2267 1924 of 437.46Up
Crop226 74 of 4 3.70Up
Midgut30 13 of 4 0.50Down
Tubule126 274 of 4 2.10Up
Hindgut466 54 of 4 7.70Up
Heart7 24 of 4 0.13Down
Fat body17 34 of 4 0.28Down
Ovary24 04 of 4 0.40Down
Testis133 64 of 4 2.20Up
Male accessory glands483 294 of 4 8.00Up
Virgin spermatheca95 74 of 4 1.57Up
Mated spermatheca132 164 of 4 2.19Up
Adult carcass41 44 of 4 0.70Down
Larval CNS15 24 of 4 0.25Down
Larval Salivary gland673 414 of 411.13Up
Larval midgut44 24 of 4 0.73Down
Larval tubule801 824 of 413.20Up
Larval hindgut392 124 of 4 6.48Up
Larval fat body27 52 of 4 0.40Down
Larval trachea289 274 of 4 4.79Up
Larval carcass108 124 of 4 1.79Up
S2 cells (growing)13 23 of 4 0.22Down
Whole fly60 54 of 4

Looking for CG18507-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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