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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18516-RA through 18771 annotations produced 1 hits



(CG18516):

Annotation Number : CG18516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038350
Gbrowse : chr3R:11374349-11378494 (-) // 100.0 //
Probeset : 1634272_at
Accessions : protein= NP_650478;, nucleotide= NM_142221;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from el
FlyMine data for FBgn0038350.
Homophila reports that CG18516 is a close match (1e-124) to human gene XDH (NP_000370), a gene associated with Xanthinuria, type I, 278300 (3).
VDRC has 2 RNAi stocks for FBgn0038350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40Down
Head52 ± 34 of 4 5.90Up
Eye6 ± 21 of 4 0.70None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40Down
Salivary gland12 ± 60 of 4 1.39None
Crop6 ± 21 of 4 0.70None
Midgut6 ± 10 of 4 0.80None
Tubule6 ± 10 of 4 0.70Down
Hindgut6 ± 11 of 4 0.70None
Heart1 ± 00 of 4 0.13Down
Fat body2 ± 10 of 4 0.22Down
Ovary2 ± 10 of 4 0.30Down
Testis4 ± 10 of 4 0.50None
Male accessory glands7 ± 20 of 4 0.80None
Virgin spermatheca4 ± 10 of 4 0.55Down
Mated spermatheca4 ± 10 of 4 0.46None
Adult carcass7 ± 30 of 4 0.80None
Larval CNS2 ± 10 of 4 0.30Down
Larval Salivary gland1 ± 00 of 4 0.11Down
Larval midgut2 ± 00 of 4 0.29Down
Larval tubule7 ± 00 of 4 0.90None
Larval hindgut2 ± 10 of 4 0.28Down
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.26Down
Larval carcass2 ± 00 of 4 0.27Down
S2 cells (growing)6 ± 00 of 4 0.68Down
Whole fly8 ± 01 of 4

Looking for CG18516-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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