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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18518-RA through 18771 annotations produced 1 hits


Annotation Number : CG18518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028900
Gbrowse : chr2L:15834609-15835608 (-) // 100.0 //
Probeset : 1640147_at
Accessions : protein= NP_609768;, nucleotide= NM_135924;
FlyMine data for FBgn0028900.
VDRC has 2 RNAi stocks for FBgn0028900 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye2 00 of 4 0.22Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland12 30 of 4 0.94None
Crop1 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.06Down
Fat body3 30 of 4 0.27Down
Ovary0 00 of 4 0.10Down
Testis215 84 of 416.60Up
Male accessory glands7 20 of 4 0.60None
Virgin spermatheca3 10 of 4 0.29Down
Mated spermatheca6 00 of 4 0.49None
Adult carcass3 10 of 4 0.20Down
Larval CNS2 10 of 4 0.19Down
Larval Salivary gland7 20 of 4 0.61None
Larval midgut2 10 of 4 0.16Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.12Down
Larval fat body55 243 of 4 4.20None
Larval trachea2 21 of 4 0.19Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)2 00 of 4 0.22Down
Whole fly13 20 of 4

Looking for CG18518-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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