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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18528-RA through 18771 annotations produced 1 hits



(CG18528):

Annotation Number : CG18528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039189
Gbrowse : chr3R:20183814-20185848 (-) // 100.0 //
Probeset : 1636997_at
Accessions : protein= NP_651251;, nucleotide= NM_142994;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0039189.
BDGP gene expression has embryonic in situ data for CG18528: 12 pix of staining in 3 body parts.
BioGrid reports that CG18528 interacts with CG7793 Dmel CR31838 .
TRiP has 1 RNAi stocks for FBgn0039189 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 14 of 4 0.50Down
Head24 ± 04 of 4 0.30Down
Eye23 ± 04 of 4 0.27Down
Thoracicoabdominal ganglion43 ± 04 of 4 0.50Down
Salivary gland20 ± 23 of 4 0.24Down
Crop46 ± 54 of 4 0.50Down
Midgut36 ± 34 of 4 0.40Down
Tubule32 ± 24 of 4 0.40Down
Hindgut35 ± 44 of 4 0.40Down
Heart17 ± 11 of 4 0.20Down
Fat body6 ± 30 of 4 0.07Down
Ovary194 ± 24 of 4 2.30Up
Testis19 ± 14 of 4 0.20Down
Male accessory glands16 ± 14 of 4 0.20Down
Virgin spermatheca12 ± 00 of 4 0.15Down
Mated spermatheca10 ± 10 of 4 0.12Down
Adult carcass11 ± 40 of 4 0.10Down
Larval CNS135 ± 84 of 4 1.60Up
Larval Salivary gland37 ± 14 of 4 0.44Down
Larval midgut141 ± 264 of 4 1.68None
Larval tubule372 ± 144 of 4 4.40Up
Larval hindgut123 ± 154 of 4 1.47None
Larval fat body85 ± 134 of 4 1.00None
Larval trachea89 ± 184 of 4 1.06None
Larval carcass171 ± 424 of 4 2.03None
S2 cells (growing)169 ± 14 of 4 2.01Up
Whole fly84 ± 24 of 4

Looking for CG18528-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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