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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18530-RA through 18771 annotations produced 1 hits



(CG18530):

Annotation Number : CG18530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042207
Gbrowse : chr3R:8459080-8460374 (+) // 100.0 //
Probeset : 1631781_at
Accessions : protein= NP_652714;, nucleotide= NM_144457;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0042207.
Homophila reports that CG18530 is a close match (7e-45) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 3 RNAi stocks for FBgn0042207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head1 ± 00 of 4 0.40None
Eye1 ± 00 of 4 0.27None
Thoracicoabdominal ganglion2 ± 10 of 4 0.50None
Salivary gland105 ± 64 of 423.92Up
Crop4 ± 10 of 4 1.00None
Midgut3 ± 20 of 4 0.80None
Tubule2 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.40None
Heart1 ± 00 of 4 0.32None
Fat body1 ± 10 of 4 0.44None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 11 of 4 0.50None
Male accessory glands75 ± 24 of 417.00Up
Virgin spermatheca3 ± 00 of 4 0.76None
Mated spermatheca6 ± 21 of 4 1.41None
Adult carcass3 ± 10 of 4 0.70None
Larval CNS1 ± 00 of 4 0.34None
Larval Salivary gland2 ± 00 of 4 0.64None
Larval midgut1 ± 00 of 4 0.39None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut0 ± 00 of 4 0.14None
Larval fat body5 ± 20 of 4 1.30None
Larval trachea136 ± 504 of 430.87Up
Larval carcass3 ± 10 of 4 0.78None
S2 cells (growing)2 ± 00 of 4 0.59None
Whole fly4 ± 21 of 4

Looking for CG18530-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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