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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18539-RA through 18771 annotations produced 1 hits



(CG18539):

Annotation Number : CG18539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034325
Gbrowse : chr2R:14185939-14186386 (+) // 100.0 //
Probeset : 1635443_at
Accessions : protein= NP_611315;, nucleotide= NM_137471;
FlyMine data for FBgn0034325.
BioGrid reports that CG18539 interacts with CG9181 .
VDRC has 2 RNAi stocks for FBgn0034325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.13Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland9 30 of 4 0.72None
Crop1 10 of 4 0.10Down
Midgut6 20 of 4 0.50None
Tubule3 00 of 4 0.30Down
Hindgut2 00 of 4 0.20Down
Heart1 00 of 4 0.09Down
Fat body2 10 of 4 0.21Down
Ovary0 00 of 4 0.00Down
Testis24 34 of 4 2.00Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 10 of 4 0.12Down
Mated spermatheca3 10 of 4 0.29Down
Adult carcass47 54 of 4 3.70Up
Larval CNS1 00 of 4 0.13Down
Larval Salivary gland4 10 of 4 0.34Down
Larval midgut7 20 of 4 0.56None
Larval tubule4 10 of 4 0.40Down
Larval hindgut1 00 of 4 0.11Down
Larval fat body7 10 of 4 0.60None
Larval trachea3 20 of 4 0.25Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)3 10 of 4 0.28Down
Whole fly12 20 of 4

Looking for CG18539-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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