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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18547-RA through 18771 annotations produced 1 hits



(CG18547):

Annotation Number : CG18547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037973
Gbrowse : chr3R:7804342-7806066 (-) // 100.0 //
Probeset : 1626248_at
Accessions : protein= NP_650138;, nucleotide= NM_141881;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0037973.
VDRC has 1 RNAi stocks for FBgn0037973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 14 of 4 0.20Down
Head222 ± 124 of 4 1.50Up
Eye78 ± 104 of 4 0.53Down
Thoracicoabdominal ganglion39 ± 24 of 4 0.30Down
Salivary gland40 ± 54 of 4 0.27Down
Crop29 ± 24 of 4 0.20Down
Midgut1627 ± 214 of 411.00Up
Tubule172 ± 114 of 4 1.20Up
Hindgut173 ± 34 of 4 1.20None
Heart207 ± 244 of 4 1.40None
Fat body418 ± 444 of 4 2.83Up
Ovary35 ± 44 of 4 0.20Down
Testis18 ± 14 of 4 0.10Down
Male accessory glands41 ± 64 of 4 0.30Down
Virgin spermatheca539 ± 104 of 4 3.64Up
Mated spermatheca455 ± 284 of 4 3.08Up
Adult carcass276 ± 104 of 4 1.90Up
Larval CNS40 ± 74 of 4 0.27Down
Larval Salivary gland30 ± 64 of 4 0.20Down
Larval midgut532 ± 474 of 4 3.59Up
Larval tubule39 ± 34 of 4 0.30Down
Larval hindgut121 ± 54 of 4 0.82None
Larval fat body346 ± 254 of 4 2.30Up
Larval trachea139 ± 74 of 4 0.94None
Larval carcass76 ± 44 of 4 0.52Down
S2 cells (growing)71 ± 64 of 4 0.48Down
Whole fly148 ± 94 of 4

Looking for CG18547-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime