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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18550-RA through 18771 annotations produced 1 hits



yellow f (yellow-f):

Annotation Number : CG18550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041710
Gbrowse : chr3R:8817170-8818923 (-) // 100.0 //
Probeset : 1637370_at
Accessions : protein= NP_524335;, nucleotide= NM_079611;
Pathway : 0005576 // extracellular region // inferred from direct assay
Interpro : 0004167 // dopachrome isomerase activity // inferred from direct assay /// 0004167 // dopachrome isomerase activity // i
FlyMine data for FBgn0041710.
VDRC has 3 RNAi stocks for FBgn0041710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.30Down
Head44 ± 44 of 4 3.00Up
Eye17 ± 33 of 4 1.18None
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.36Down
Crop6 ± 20 of 4 0.50None
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut12 ± 10 of 4 0.80None
Heart119 ± 64 of 4 8.14Up
Fat body80 ± 134 of 4 5.50Up
Ovary4 ± 00 of 4 0.30Down
Testis13 ± 03 of 4 0.90None
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca69 ± 44 of 4 4.72Up
Mated spermatheca65 ± 44 of 4 4.43Up
Adult carcass44 ± 24 of 4 3.00Up
Larval CNS0 ± 00 of 4 0.06Down
Larval Salivary gland13 ± 10 of 4 0.92None
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule20 ± 32 of 4 1.40None
Larval hindgut18 ± 24 of 4 1.24None
Larval fat body2046 ± 2204 of 4139.20Up
Larval trachea17 ± 54 of 4 1.17None
Larval carcass65 ± 194 of 4 4.43None
S2 cells (growing)802 ± 444 of 454.61Up
Whole fly14 ± 02 of 4

Looking for CG18550-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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