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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18554-RA through 18771 annotations produced 1 hits



CG18554 (Octbeta3R):

Annotation Number : CG18554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250910
Gbrowse : chr3R:8342163-8344041 (-) // 100.0 //
Probeset : 1636627_at
Accessions : protein= NP_001034043; /// NP_001034046; /// NP_001034048; /// NP_650210;, nucleotide= NM_001038954; /// NM_001038957; /// NM_001038959; /// NM_001038959; /// NM_141953; /// NM_141953;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0250910.
TRiP has 1 RNAi stocks for FBgn0250910 available for purchase.
VDRC has 8 RNAi stocks for FBgn0250910 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 415.90Up
Head0 00 of 4 1.10None
Eye3 10 of 4 4.43None
Thoracicoabdominal ganglion5 20 of 4 7.30None
Salivary gland6 20 of 4 8.47None
Crop1 00 of 4 2.30None
Midgut1 00 of 4 1.70None
Tubule3 00 of 4 4.30Up
Hindgut0 00 of 4 0.70None
Heart2 00 of 4 3.73None
Fat body0 00 of 4 0.83None
Ovary2 00 of 4 3.60None
Testis1 00 of 4 1.70None
Male accessory glands4 10 of 4 5.30None
Virgin spermatheca0 00 of 4 0.67Down
Mated spermatheca0 00 of 4 1.23Up
Adult carcass1 00 of 4 1.70Up
Larval CNS2 10 of 4 3.33None
Larval Salivary gland2 00 of 4 3.80Up
Larval midgut1 00 of 4 1.60None
Larval tubule3 10 of 4 4.00None
Larval hindgut0 00 of 4 0.77None
Larval fat body1 00 of 4 1.50None
Larval trachea3 40 of 4 4.83None
Larval carcass0 00 of 4 0.97None
S2 cells (growing)0 00 of 4 1.30None
Whole fly0 00 of 4

Looking for CG18554-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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