FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1856-RF through 18771 annotations produced 1 hits

tramtrack (ttk):

Annotation Number : CG1856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003870
Gbrowse : chr3R:27539605-27558117 (+) // 100.0 //
Probeset : 1636673_s_at
Accessions : protein= NP_524911; /// NP_733443; /// NP_733444; /// NP_733445; /// NP_733446; /// NP_733447;, nucleotide= NM_080172; /// NM_170564; /// NM_170565; /// NM_170566; /// NM_170567; /// NM_170568;
Pathway : open tracheal system // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant
Interpro : open tracheal system // inferred from mutant phenotype /// 0035147 // branch fusion
FlyMine data for FBgn0003870.
BDGP gene expression has embryonic in situ data for ttk: 31 pix of staining in 29 body parts.
BioGrid reports that CG1856 interacts with CG5738 CG6459 CG6486 CG6741 CG7057 CG7386 CG2009 CG3018 CG31090 CG31365 CG32505 CG3371 CG4257 CG5441 CG5711 CG7200 CG8942 CG3796 CG3796 CG3166 CG3166 CG9375 CG1849 CG18085 CG9949 CG9949 CG1395 CG7583 CG7583 CG8103 CG2899 CG8817 CG5099 CG5099 CG10108 CG10108 CG10108 CG10108 Dmel CR31863 .
TRiP has 2 RNAi stocks for FBgn0003870 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003870 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	62 ± 4	4 of 4	0.40	Down
Head	201 ± 13	4 of 4	1.20	None
Eye	227 ± 24	4 of 4	1.40	None
Thoracicoabdominal ganglion	66 ± 3	4 of 4	0.40	Down
Salivary gland	543 ± 25	4 of 4	3.35	Up
Crop	311 ± 14	4 of 4	1.90	Up
Midgut	117 ± 7	4 of 4	0.70	Down
Tubule	96 ± 5	4 of 4	0.60	Down
Hindgut	216 ± 4	4 of 4	1.30	Up
Heart	143 ± 12	4 of 4	0.89	None
Fat body	239 ± 14	4 of 4	1.47	Up
Ovary	208 ± 12	4 of 4	1.30	Up
Testis	30 ± 2	4 of 4	0.20	Down
Male accessory glands	319 ± 12	4 of 4	2.00	Up
Virgin spermatheca	139 ± 16	4 of 4	0.86	None
Mated spermatheca	166 ± 6	4 of 4	1.02	None
Adult carcass	160 ± 8	4 of 4	1.00	None
Larval CNS	81 ± 2	4 of 4	0.50	Down
Larval Salivary gland	429 ± 19	4 of 4	2.65	Up
Larval midgut	112 ± 10	4 of 4	0.69	Down
Larval tubule	162 ± 7	4 of 4	1.00	None
Larval hindgut	248 ± 8	4 of 4	1.53	Up
Larval fat body	101 ± 6	4 of 4	0.60	Down
Larval trachea	203 ± 7	4 of 4	1.25	Up
Larval carcass	218 ± 10	4 of 4	1.34	Up
S2 cells (growing)	286 ± 8	4 of 4	1.77	Up
Whole fly	162 ± 11	4 of 4

Looking for CG1856-RF. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720