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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18563-RA through 18771 annotations produced 1 hits



(CG18563):

Annotation Number : CG18563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032639
Gbrowse : chr2L:17456754-17457781 (-) // 100.0 //
Probeset : 1623871_at
Accessions : protein= NP_609841;, nucleotide= NM_135997;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0032639.
Homophila reports that CG18563 is a close match (9e-11) to human gene PLAU;URK (NP_002649), a gene associated with {Alzheimer disease, late-onset, susceptibility to}, 104300 (3).
BioGrid reports that CG18563 interacts with CG7869 .
TRiP has 1 RNAi stocks for FBgn0032639 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 14 of 4 1.10None
Head10 ± 12 of 4 1.30None
Eye7 ± 11 of 4 0.85None
Thoracicoabdominal ganglion9 ± 12 of 4 1.10None
Salivary gland16 ± 21 of 4 2.00None
Crop8 ± 10 of 4 1.00None
Midgut7 ± 00 of 4 0.90None
Tubule11 ± 02 of 4 1.40Up
Hindgut6 ± 11 of 4 0.80None
Heart9 ± 11 of 4 1.10None
Fat body18 ± 94 of 4 2.18None
Ovary3 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.30None
Male accessory glands11 ± 11 of 4 1.30None
Virgin spermatheca98 ± 534 of 411.75None
Mated spermatheca37 ± 153 of 4 4.49None
Adult carcass16 ± 41 of 4 1.90None
Larval CNS6 ± 14 of 4 0.77None
Larval Salivary gland19 ± 24 of 4 2.36Up
Larval midgut6 ± 10 of 4 0.76None
Larval tubule13 ± 13 of 4 1.60None
Larval hindgut79 ± 114 of 4 9.51Up
Larval fat body4852 ± 6004 of 4579.30Up
Larval trachea23 ± 223 of 4 2.81None
Larval carcass25 ± 44 of 4 3.03Up
S2 cells (growing)7 ± 03 of 4 0.92None
Whole fly8 ± 21 of 4

Looking for CG18563-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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