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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18578-RA through 18771 annotations produced 1 hits



Ugt86Da (Ugt86Da):

Annotation Number : CG18578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040259
Gbrowse : chr3R:6982821-6985469 (+) // 100.0 //
Probeset : 1624156_at
Accessions : protein= NP_652626;, nucleotide= NM_144369;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0040259.
BDGP gene expression has embryonic in situ data for Ugt86Da: 6 pix of staining in 1 body parts.
Homophila reports that CG18578 is a close match (9e-47) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
BioGrid reports that CG18578 interacts with CG31764 .
VDRC has 2 RNAi stocks for FBgn0040259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 54 of 4 0.50Down
Head335 ± 144 of 4 2.20Up
Eye131 ± 114 of 4 0.86None
Thoracicoabdominal ganglion152 ± 104 of 4 1.00None
Salivary gland771 ± 304 of 4 5.03Up
Crop645 ± 204 of 4 4.20Up
Midgut767 ± 274 of 4 5.00Up
Tubule157 ± 74 of 4 1.00None
Hindgut613 ± 84 of 4 4.00Up
Heart102 ± 44 of 4 0.67Down
Fat body76 ± 34 of 4 0.50Down
Ovary133 ± 44 of 4 0.90Down
Testis64 ± 54 of 4 0.40Down
Male accessory glands348 ± 304 of 4 2.30Up
Virgin spermatheca356 ± 234 of 4 2.32Up
Mated spermatheca323 ± 204 of 4 2.11Up
Adult carcass339 ± 84 of 4 2.20Up
Larval CNS40 ± 74 of 4 0.27Down
Larval Salivary gland56 ± 14 of 4 0.37Down
Larval midgut459 ± 574 of 4 3.00Up
Larval tubule30 ± 44 of 4 0.20Down
Larval hindgut285 ± 224 of 4 1.86Up
Larval fat body33 ± 43 of 4 0.20Down
Larval trachea447 ± 414 of 4 2.92Up
Larval carcass148 ± 104 of 4 0.97None
S2 cells (growing)294 ± 234 of 4 1.92Up
Whole fly153 ± 44 of 4

Looking for CG18578-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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