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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18585-RA through 18771 annotations produced 1 hits


(CG18585):

Annotation Number : CG18585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031929
Gbrowse : chr2L:7689365-7691057 (-) // 100.0 //
Probeset : 1632695_at
Accessions : protein= NP_609132;, nucleotide= NM_135288;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0031929.
VDRC has 2 RNAi stocks for FBgn0031929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.05Down
Crop2 ± 10 of 4 0.00Down
Midgut2501 ± 854 of 415.30Up
Tubule16 ± 31 of 4 0.10Down
Hindgut4 ± 20 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 20 of 4 0.02Down
Ovary3 ± 20 of 4 0.00Down
Testis2 ± 01 of 4 0.00Down
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.03Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS4 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.02Down
Larval midgut1353 ± 1154 of 4 8.30Up
Larval tubule66 ± 163 of 4 0.40Down
Larval hindgut2 ± 10 of 4 0.01Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)7 ± 20 of 4 0.05Down
Whole fly163 ± 324 of 4

Looking for CG18585-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime