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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18599-RA through 18771 annotations produced 1 hits



(CG18599):

Annotation Number : CG18599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038592
Gbrowse : chr3R:14093509-14096895 (+) // 100.0 //
Probeset : 1627783_at
Accessions : protein= NP_650701;, nucleotide= NM_142444;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0038592.
BDGP gene expression has embryonic in situ data for CG18599: 25 pix of staining in 9 body parts.
Homophila reports that CG18599 is a close match (2e-11) to human gene KPD;MODY9;PAX4 (NP_006184), a gene associated with Diabetes mellitus, type 2, 125853 (3);Maturity-onset diabetes of the young, type IX, 612225 (3).
VDRC has 2 RNAi stocks for FBgn0038592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 410.30Up
Head10 ± 10 of 4 5.50Up
Eye17 ± 04 of 4 8.82Up
Thoracicoabdominal ganglion15 ± 32 of 4 7.90Up
Salivary gland11 ± 40 of 4 5.61None
Crop7 ± 00 of 4 3.90Up
Midgut3 ± 10 of 4 1.90None
Tubule5 ± 00 of 4 2.60Up
Hindgut3 ± 10 of 4 1.70None
Heart2 ± 10 of 4 1.43None
Fat body8 ± 60 of 4 4.34None
Ovary1 ± 00 of 4 0.90None
Testis5 ± 00 of 4 2.70Up
Male accessory glands12 ± 30 of 4 6.20None
Virgin spermatheca4 ± 10 of 4 2.42None
Mated spermatheca6 ± 00 of 4 3.35Up
Adult carcass5 ± 10 of 4 2.70None
Larval CNS24 ± 44 of 412.52Up
Larval Salivary gland7 ± 20 of 4 3.67None
Larval midgut5 ± 20 of 4 2.94None
Larval tubule2 ± 10 of 4 1.40None
Larval hindgut4 ± 10 of 4 2.11None
Larval fat body7 ± 30 of 4 3.80None
Larval trachea5 ± 00 of 4 2.54Up
Larval carcass6 ± 10 of 4 3.11None
S2 cells (growing)3 ± 00 of 4 1.78None
Whole fly2 ± 00 of 4

Looking for CG18599-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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