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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18605-RA through 18771 annotations produced 1 hits



(CG18605):

Annotation Number : CG18605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034411
Gbrowse : chr2R:14865227-14866655 (+) // 100.0 //
Probeset : 1633916_at
Accessions : protein= NP_611389;, nucleotide= NM_137545;
FlyMine data for FBgn0034411.
BDGP gene expression has embryonic in situ data for CG18605: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head4 11 of 4 0.30Down
Eye4 10 of 4 0.27Down
Thoracicoabdominal ganglion9 11 of 4 0.50Down
Salivary gland17 40 of 4 1.02None
Crop6 10 of 4 0.40Down
Midgut12 00 of 4 0.70None
Tubule11 10 of 4 0.60Down
Hindgut7 10 of 4 0.40Down
Heart3 00 of 4 0.23Down
Fat body10 41 of 4 0.62None
Ovary8 11 of 4 0.50Down
Testis130 24 of 4 7.60Up
Male accessory glands12 21 of 4 0.70None
Virgin spermatheca10 02 of 4 0.63None
Mated spermatheca10 00 of 4 0.64None
Adult carcass14 20 of 4 0.90None
Larval CNS8 11 of 4 0.48Down
Larval Salivary gland18 20 of 4 1.10None
Larval midgut15 10 of 4 0.90None
Larval tubule8 00 of 4 0.50Down
Larval hindgut7 20 of 4 0.46Down
Larval fat body34 73 of 4 2.00None
Larval trachea10 02 of 4 0.62None
Larval carcass13 20 of 4 0.82None
S2 cells (growing)8 20 of 4 0.51Down
Whole fly17 24 of 4

Looking for CG18605-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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