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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18606-RA through 18771 annotations produced 1 hits



/// (CG10476 /// CG18606):

Annotation Number : CG18606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034426 /// FBgn0034428
Gbrowse : chr2R:15175526-15176156 (+) // 100.0 // /// chr2R:15171833-15172685 (-) // 97.78 //
Probeset : 1639362_s_at
Accessions : protein= NP_611403; /// NP_611405;, nucleotide= NM_137559; /// NM_137561;
FlyMine data for FBgn0034426 /// FBgn0034428.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head8 10 of 4 1.60None
Eye2 10 of 4 0.54None
Thoracicoabdominal ganglion3 00 of 4 0.70None
Salivary gland9 50 of 4 1.82None
Crop5 11 of 4 1.10None
Midgut9 14 of 4 1.80None
Tubule5 10 of 4 1.10None
Hindgut8 01 of 4 1.60None
Heart1 00 of 4 0.33None
Fat body14 13 of 4 2.77Up
Ovary2 00 of 4 0.40None
Testis4 00 of 4 0.80None
Male accessory glands6 20 of 4 1.30None
Virgin spermatheca8 10 of 4 1.65None
Mated spermatheca9 11 of 4 1.91None
Adult carcass5 20 of 4 1.20None
Larval CNS6 12 of 4 1.33None
Larval Salivary gland5 10 of 4 1.05None
Larval midgut576 1464 of 4111.95Up
Larval tubule18 14 of 4 3.60Up
Larval hindgut35 134 of 4 6.83None
Larval fat body4 10 of 4 0.90None
Larval trachea2 10 of 4 0.47None
Larval carcass3 10 of 4 0.75None
S2 cells (growing)4 10 of 4 0.92None
Whole fly5 11 of 4

Looking for CG18606-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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