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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18617-RB through 18771 annotations produced 1 hits



Vha100-2 (Vha100-2):

Annotation Number : CG18617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028670
Gbrowse : chr3R:14216038-14224876 (-) // 100.0 //
Probeset : 1631359_s_at
Accessions : protein= NP_650722; /// NP_732337;, nucleotide= NM_142465; /// NM_169810;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct ass
FlyMine data for FBgn0028670.
Homophila reports that CG18617 is a close match (1e-118) to human gene OC116;OPTB1;TCIRG1;TIRC7 (NP_006044), a gene associated with Osteopetrosis, recessive 1, 259700 (3).
BioGrid reports that CG18617 interacts with CG3187 CG4290 CG4303 CG5422 CG6601 CG9930 .
VDRC has 3 RNAi stocks for FBgn0028670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 04 of 4 0.10Down
Head383 ± 374 of 4 0.60Down
Eye149 ± 64 of 4 0.23Down
Thoracicoabdominal ganglion121 ± 64 of 4 0.20Down
Salivary gland6360 ± 534 of 4 9.60Up
Crop515 ± 194 of 4 0.80None
Midgut1469 ± 244 of 4 2.20Up
Tubule3657 ± 1304 of 4 5.50Up
Hindgut3357 ± 664 of 4 5.10Up
Heart207 ± 64 of 4 0.31Down
Fat body130 ± 204 of 4 0.20Down
Ovary662 ± 154 of 4 1.00None
Testis83 ± 64 of 4 0.10Down
Male accessory glands156 ± 54 of 4 0.20Down
Virgin spermatheca508 ± 234 of 4 0.77None
Mated spermatheca600 ± 214 of 4 0.91None
Adult carcass531 ± 304 of 4 0.80None
Larval CNS268 ± 274 of 4 0.41Down
Larval Salivary gland1616 ± 424 of 4 2.44Up
Larval midgut1655 ± 824 of 4 2.50Up
Larval tubule1758 ± 994 of 4 2.70Up
Larval hindgut3184 ± 454 of 4 4.81Up
Larval fat body166 ± 194 of 4 0.30Down
Larval trachea1226 ± 684 of 4 1.85Up
Larval carcass1124 ± 224 of 4 1.70Up
S2 cells (growing)657 ± 234 of 4 0.99None
Whole fly662 ± 774 of 4

Looking for CG18617-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime