FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18619-RA through 18771 annotations produced 1 hits

(CG18619):

Annotation Number : CG18619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032202
Gbrowse : chr2L:10264130-10265229 (+) // 100.0 //
Probeset : 1632515_a_at
Accessions : protein= NP_609363; /// NP_723546; /// NP_723547; /// NP_723548;, nucleotide= NM_135519; /// NM_164903; /// NM_164904; /// NM_164905;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0032202.
BDGP gene expression has embryonic in situ data for CG18619: 11 pix of staining in 6 body parts.
BioGrid reports that CG18619 interacts with CG1968 CG3590 CG4755 CG5280 CG5709 CG6156 CG7952 .
TRiP has 1 RNAi stocks for FBgn0032202 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032202 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	513 ± 11	4 of 4	1.90	Up
Head	548 ± 55	4 of 4	2.00	Up
Eye	640 ± 39	4 of 4	2.31	Up
Thoracicoabdominal ganglion	479 ± 29	4 of 4	1.70	Up
Salivary gland	606 ± 58	4 of 4	2.19	Up
Crop	512 ± 15	4 of 4	1.90	Up
Midgut	363 ± 12	4 of 4	1.30	Up
Tubule	1113 ± 65	4 of 4	4.00	Up
Hindgut	494 ± 8	4 of 4	1.80	Up
Heart	565 ± 15	4 of 4	2.04	Up
Fat body	604 ± 47	4 of 4	2.18	Up
Ovary	168 ± 5	4 of 4	0.60	Down
Testis	41 ± 4	4 of 4	0.20	Down
Male accessory glands	624 ± 29	4 of 4	2.30	Up
Virgin spermatheca	1021 ± 141	4 of 4	3.69	Up
Mated spermatheca	995 ± 58	4 of 4	3.60	Up
Adult carcass	392 ± 25	4 of 4	1.40	Up
Larval CNS	397 ± 30	4 of 4	1.44	Up
Larval Salivary gland	380 ± 47	4 of 4	1.38	None
Larval midgut	465 ± 77	4 of 4	1.68	None
Larval tubule	867 ± 26	4 of 4	3.10	Up
Larval hindgut	464 ± 41	4 of 4	1.68	Up
Larval fat body	465 ± 61	4 of 4	1.70	Up
Larval trachea	518 ± 132	4 of 4	1.87	Up
Larval carcass	361 ± 53	4 of 4	1.31	None
S2 cells (growing)	384 ± 12	4 of 4	1.39	Up
Whole fly	276 ± 28	4 of 4

Looking for CG18619-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720