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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18624-RA through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase MNLL (CG18624):

Annotation Number : CG18624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029971
Gbrowse : chrX:7787076-7787829 (-) // 100.0 //
Probeset : 1638721_s_at
Accessions : protein= NP_001162693; /// NP_001162694; /// NP_572416; /// NP_727209;, nucleotide= NM_001169222; /// NM_001169223; /// NM_132188; /// NM_167134;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0029971.
BioGrid reports that CG18624 interacts with CG5114 CG4264 CG5494 CG7981 .
VDRC has 4 RNAi stocks for FBgn0029971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1243 ± 334 of 4 1.40Up
Head1161 ± 584 of 4 1.30Up
Eye1949 ± 854 of 4 2.20Up
Thoracicoabdominal ganglion1619 ± 764 of 4 1.80Up
Salivary gland2033 ± 804 of 4 2.30Up
Crop1021 ± 484 of 4 1.20None
Midgut994 ± 254 of 4 1.10None
Tubule1226 ± 284 of 4 1.40Up
Hindgut1642 ± 104 of 4 1.90Up
Heart1426 ± 334 of 4 1.61Up
Fat body1069 ± 644 of 4 1.21Up
Ovary624 ± 64 of 4 0.70Down
Testis310 ± 44 of 4 0.40Down
Male accessory glands781 ± 14 of 4 0.90None
Virgin spermatheca982 ± 354 of 4 1.11None
Mated spermatheca943 ± 284 of 4 1.06None
Adult carcass1827 ± 634 of 4 2.10Up
Larval CNS673 ± 724 of 4 0.76Down
Larval Salivary gland931 ± 284 of 4 1.05None
Larval midgut933 ± 724 of 4 1.05None
Larval tubule611 ± 514 of 4 0.70Down
Larval hindgut1524 ± 724 of 4 1.72Up
Larval fat body333 ± 254 of 4 0.40Down
Larval trachea1015 ± 364 of 4 1.15None
Larval carcass1564 ± 1154 of 4 1.77Up
S2 cells (growing)698 ± 164 of 4 0.79Down
Whole fly885 ± 454 of 4

Looking for CG18624-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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