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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1864-RB through 18771 annotations produced 2 hits



Hormone receptor-like in 38 (Hr38):

Annotation Number : CG1864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014859
Gbrowse : chr2L:20683459-20688942 (-) // 100.0 //
Probeset : 1639366_at
Accessions : protein= NP_001163024; /// NP_477119; /// NP_788079;, nucleotide= NM_001169553; /// NM_057771; /// NM_176065;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0014859.
Homophila reports that CG1864 is a close match (2e-16) to human gene VDR (NP_001017535), a gene associated with Osteoporosis, involutional, 166710 (1) (?);Rickets, vitamin D-resistant, type IIA, 277440 (3).
TRiP has 2 RNAi stocks for FBgn0014859 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain282 234 of 423.90Up
Head52 184 of 4 4.50None
Eye13 24 of 4 1.13None
Thoracicoabdominal ganglion145 104 of 412.30Up
Salivary gland6 20 of 4 0.54None
Crop14 13 of 4 1.30None
Midgut3 00 of 4 0.30Down
Tubule3 00 of 4 0.30Down
Hindgut10 14 of 4 0.90None
Heart3 10 of 4 0.26Down
Fat body4 31 of 4 0.41Down
Ovary1 00 of 4 0.10Down
Testis0 00 of 4 0.00Down
Male accessory glands232 534 of 419.60Up
Virgin spermatheca4 11 of 4 0.39Down
Mated spermatheca3 11 of 4 0.25Down
Adult carcass21 14 of 4 1.80Up
Larval CNS39 94 of 4 3.37Up
Larval Salivary gland4 10 of 4 0.40Down
Larval midgut3 10 of 4 0.25Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut15 14 of 4 1.27None
Larval fat body5 20 of 4 0.40Down
Larval trachea76 184 of 4 6.49Up
Larval carcass145 284 of 412.32Up
S2 cells (growing)2 00 of 4 0.20Down
Whole fly11 14 of 4



Hormone receptor-like in 38 (Hr38):

Annotation Number : CG1864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014859
Gbrowse : chr2L:20686664-20714589 (-) // 99.89 //
Probeset : 1633229_a_at
Accessions : protein= NP_001163024; /// NP_477119; /// NP_788079;, nucleotide= NM_001169553; /// NM_057771; /// NM_176065;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0014859.
Homophila reports that CG1864 is a close match (2e-16) to human gene VDR (NP_001017535), a gene associated with Osteoporosis, involutional, 166710 (1) (?);Rickets, vitamin D-resistant, type IIA, 277440 (3).
TRiP has 2 RNAi stocks for FBgn0014859 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 3.80Up
Head5 10 of 4 1.50None
Eye5 00 of 4 1.50None
Thoracicoabdominal ganglion7 20 of 4 1.90None
Salivary gland5 00 of 4 1.46None
Crop8 31 of 4 2.30None
Midgut2 00 of 4 0.80None
Tubule4 00 of 4 1.10None
Hindgut6 10 of 4 1.80None
Heart2 10 of 4 0.71None
Fat body8 60 of 4 2.31None
Ovary4 10 of 4 1.30None
Testis1 00 of 4 0.40None
Male accessory glands45 93 of 412.50Up
Virgin spermatheca5 20 of 4 1.61None
Mated spermatheca6 10 of 4 1.64None
Adult carcass5 20 of 4 1.60None
Larval CNS7 12 of 4 2.02None
Larval Salivary gland3 00 of 4 0.83None
Larval midgut7 20 of 4 2.01None
Larval tubule5 00 of 4 1.60None
Larval hindgut9 11 of 4 2.46None
Larval fat body5 20 of 4 1.50None
Larval trachea11 33 of 4 3.05Up
Larval carcass20 12 of 4 5.69Up
S2 cells (growing)3 00 of 4 1.05None
Whole fly3 10 of 4

Looking for CG1864-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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