Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18643-RA through 18771 annotations produced 1 hits



(CG18643):

Annotation Number : CG18643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037898
Gbrowse : chr3R:7255803-7256458 (+) // 100.0 //
Probeset : 1638845_at
Accessions : protein= NP_650072;, nucleotide= NM_141815;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity
FlyMine data for FBgn0037898.
VDRC has 1 RNAi stocks for FBgn0037898 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 24 of 4 1.40Up
Head58 ± 44 of 4 1.20None
Eye75 ± 24 of 4 1.60Up
Thoracicoabdominal ganglion68 ± 34 of 4 1.50Up
Salivary gland26 ± 21 of 4 0.55Down
Crop42 ± 14 of 4 0.90None
Midgut48 ± 54 of 4 1.00None
Tubule59 ± 24 of 4 1.30Up
Hindgut50 ± 24 of 4 1.10None
Heart41 ± 24 of 4 0.88None
Fat body48 ± 104 of 4 1.02None
Ovary60 ± 24 of 4 1.30Up
Testis10 ± 14 of 4 0.20Down
Male accessory glands73 ± 94 of 4 1.50None
Virgin spermatheca23 ± 34 of 4 0.49Down
Mated spermatheca45 ± 64 of 4 0.96None
Adult carcass53 ± 54 of 4 1.10None
Larval CNS68 ± 54 of 4 1.44Up
Larval Salivary gland48 ± 34 of 4 1.03None
Larval midgut29 ± 34 of 4 0.63Down
Larval tubule16 ± 11 of 4 0.40Down
Larval hindgut54 ± 54 of 4 1.14None
Larval fat body11 ± 20 of 4 0.20Down
Larval trachea90 ± 114 of 4 1.91Up
Larval carcass47 ± 84 of 4 0.99None
S2 cells (growing)36 ± 14 of 4 0.76Down
Whole fly47 ± 14 of 4

Looking for CG18643-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime