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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18647-RA through 18771 annotations produced 3 hits



Biniou (bin):

Annotation Number : CG18647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045759
Gbrowse : chr3L:6983721-6987539 (+) // 99.79 //
Probeset : 1639948_a_at
Accessions : protein= NP_523950;, nucleotide= NM_079226;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from mutan
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0045759.
Homophila reports that CG18647 is a close match (8e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683697), a gene associated with Speech-language disorder-1, 602081 (3).
TRiP has 1 RNAi stocks for FBgn0045759 available for purchase.
VDRC has 2 RNAi stocks for FBgn0045759 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.30None
Head1 00 of 4 0.10Down
Eye3 00 of 4 0.37Down
Thoracicoabdominal ganglion2 10 of 4 0.30Down
Salivary gland3 00 of 4 0.35Down
Crop124 24 of 414.80Up
Midgut40 62 of 4 4.90Up
Tubule2 00 of 4 0.30Down
Hindgut49 14 of 4 5.80Up
Heart0 00 of 4 0.10Down
Fat body3 20 of 4 0.44Down
Ovary5 20 of 4 0.70None
Testis13 14 of 4 1.60Up
Male accessory glands4 10 of 4 0.50None
Virgin spermatheca1 00 of 4 0.21Down
Mated spermatheca1 00 of 4 0.22Down
Adult carcass2 10 of 4 0.30Down
Larval CNS2 10 of 4 0.24Down
Larval Salivary gland4 00 of 4 0.57None
Larval midgut20 31 of 4 2.40Up
Larval tubule7 20 of 4 0.90None
Larval hindgut36 24 of 4 4.33Up
Larval fat body14 40 of 4 1.70None
Larval trachea2 20 of 4 0.29Down
Larval carcass11 10 of 4 1.39None
S2 cells (growing)0 00 of 4 0.12Down
Whole fly8 10 of 4



Biniou (bin):

Annotation Number : CG18647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045759
Gbrowse : chr3L:6986536-6987539 (+) // 99.5 //
Probeset : 1638966_at
Accessions : protein= NP_523950;, nucleotide= NM_079226;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from mutan
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0045759.
Homophila reports that CG18647 is a close match (8e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683697), a gene associated with Speech-language disorder-1, 602081 (3).
TRiP has 1 RNAi stocks for FBgn0045759 available for purchase.
VDRC has 2 RNAi stocks for FBgn0045759 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head3 20 of 4 1.10None
Eye1 00 of 4 0.48None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland4 10 of 4 1.54None
Crop2 00 of 4 0.80None
Midgut4 10 of 4 1.70None
Tubule2 00 of 4 0.70Down
Hindgut2 10 of 4 0.90None
Heart0 00 of 4 0.11None
Fat body1 00 of 4 0.38None
Ovary1 00 of 4 0.40None
Testis3 00 of 4 1.30None
Male accessory glands2 00 of 4 0.90None
Virgin spermatheca1 00 of 4 0.68None
Mated spermatheca2 00 of 4 0.78None
Adult carcass5 20 of 4 1.90None
Larval CNS1 00 of 4 0.71None
Larval Salivary gland2 10 of 4 1.04None
Larval midgut2 00 of 4 1.05None
Larval tubule2 00 of 4 0.80None
Larval hindgut0 00 of 4 0.23None
Larval fat body5 10 of 4 1.90None
Larval trachea2 10 of 4 0.80None
Larval carcass1 00 of 4 0.41None
S2 cells (growing)3 10 of 4 1.28None
Whole fly2 00 of 4



Biniou (bin):

Annotation Number : CG18647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045759
Gbrowse : chr3L:6983721-6987539 (+) // 99.79 //
Probeset : 1630182_at
Accessions : protein= NP_523950;, nucleotide= NM_079226;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from mutan
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0045759.
Homophila reports that CG18647 is a close match (8e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683697), a gene associated with Speech-language disorder-1, 602081 (3).
TRiP has 1 RNAi stocks for FBgn0045759 available for purchase.
VDRC has 2 RNAi stocks for FBgn0045759 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.60None
Head5 10 of 4 0.80None
Eye3 00 of 4 0.52None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland16 60 of 4 2.60None
Crop72 54 of 411.80Up
Midgut21 20 of 4 3.40Up
Tubule4 00 of 4 0.70Down
Hindgut31 11 of 4 5.10Up
Heart2 10 of 4 0.34None
Fat body8 20 of 4 1.34None
Ovary2 10 of 4 0.50None
Testis10 20 of 4 1.70None
Male accessory glands8 20 of 4 1.30None
Virgin spermatheca9 10 of 4 1.55None
Mated spermatheca7 10 of 4 1.16None
Adult carcass11 40 of 4 1.90None
Larval CNS4 30 of 4 0.65None
Larval Salivary gland8 20 of 4 1.38None
Larval midgut12 20 of 4 2.02None
Larval tubule5 10 of 4 0.90None
Larval hindgut18 10 of 4 2.96Up
Larval fat body9 20 of 4 1.50None
Larval trachea4 10 of 4 0.72None
Larval carcass6 10 of 4 1.08None
S2 cells (growing)4 10 of 4 0.66None
Whole fly6 20 of 4

Looking for CG18647-RA. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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