FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18675-RA through 18771 annotations produced 1 hits

/// temperature-induced paralysis locus E (CG18675 /// tipE):

Annotation Number : CG18675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003710 /// FBgn0040696
Gbrowse : chr3L:4173852-4192968 (+) // 100.0 //
Probeset : 1624098_s_at
Accessions : protein= NP_523920; /// NP_652334; /// NP_728952;, nucleotide= NM_079196; /// NM_144077; /// NM_168067;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0090072 // positive regulation of sodium io
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003710 /// FBgn0040696.
BioGrid reports that CG18675 interacts with CG6607 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	197 ± 4	4 of 4	3.40	Up
Head	42 ± 8	4 of 4	0.70	None
Eye	34 ± 4	4 of 4	0.59	Down
Thoracicoabdominal ganglion	235 ± 24	4 of 4	4.10	Up
Salivary gland	17 ± 1	1 of 4	0.31	Down
Crop	2 ± 1	0 of 4	0.00	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	2 ± 1	0 of 4	0.04	Down
Fat body	5 ± 3	0 of 4	0.09	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	871 ± 22	4 of 4	15.00	Up
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	6 ± 1	0 of 4	0.10	Down
Mated spermatheca	4 ± 2	1 of 4	0.08	Down
Adult carcass	5 ± 2	0 of 4	0.10	Down
Larval CNS	49 ± 9	4 of 4	0.85	None
Larval Salivary gland	4 ± 1	0 of 4	0.08	Down
Larval midgut	1 ± 1	0 of 4	0.03	Down
Larval tubule	0 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.03	Down
Larval fat body	104 ± 61	3 of 4	1.80	None
Larval trachea	5 ± 2	0 of 4	0.09	Down
Larval carcass	4 ± 1	0 of 4	0.07	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	58 ± 3	4 of 4

Looking for CG18675-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720