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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18681-RA through 18771 annotations produced 1 hits


epsilonTrypsin (epsilonTry):

Annotation Number : CG18681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010425
Gbrowse : chr2R:7232733-7233567 (-) // 100.0 //
Probeset : 1637492_at
Accessions : protein= NP_525112;, nucleotide= NM_080373;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0010425.
Homophila reports that CG18681 is a close match (3e-14) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG18681 interacts with CG8247 .
VDRC has 2 RNAi stocks for FBgn0010425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head4 ± 30 of 4 0.00Down
Eye10 ± 51 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.00Down
Crop12 ± 61 of 4 0.00Down
Midgut5967 ± 1754 of 4 2.60Up
Tubule5 ± 00 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart6 ± 00 of 4 0.00Down
Fat body9 ± 50 of 4 0.00Down
Ovary2 ± 00 of 4 0.00Down
Testis4 ± 20 of 4 0.00Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca2 ± 00 of 4 0.00Down
Adult carcass21 ± 110 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland7 ± 20 of 4 0.00Down
Larval midgut5395 ± 1754 of 4 2.40Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut26 ± 82 of 4 0.01Down
Larval fat body16 ± 101 of 4 0.00Down
Larval trachea13 ± 71 of 4 0.01Down
Larval carcass8 ± 30 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly2252 ± 1824 of 4

Looking for CG18681-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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