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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1869-RA through 18771 annotations produced 1 hits



CG1869 (Cht7):

Annotation Number : CG1869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035398
Gbrowse : chr3L:3090984-3106956 (-) // 100.0 //
Probeset : 1639636_at
Accessions : protein= NP_647768;, nucleotide= NM_139511;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0035398.
Homophila reports that CG1869 is a close match (3e-90) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 3 RNAi stocks for FBgn0035398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 02 of 4 0.30Down
Head12 24 of 4 0.80None
Eye9 14 of 4 0.63Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland81 44 of 4 5.23Up
Crop7 12 of 4 0.50Down
Midgut3 11 of 4 0.20Down
Tubule3 00 of 4 0.20Down
Hindgut5 11 of 4 0.40Down
Heart6 41 of 4 0.42None
Fat body15 14 of 4 1.01None
Ovary3 12 of 4 0.20Down
Testis2 11 of 4 0.10Down
Male accessory glands5 11 of 4 0.40Down
Virgin spermatheca5 02 of 4 0.36Down
Mated spermatheca4 12 of 4 0.29Down
Adult carcass30 54 of 4 2.00Up
Larval CNS21 24 of 4 1.38Up
Larval Salivary gland166 154 of 410.77Up
Larval midgut8 02 of 4 0.57Down
Larval tubule6 10 of 4 0.40Down
Larval hindgut117 104 of 4 7.56Up
Larval fat body6 10 of 4 0.40Down
Larval trachea473 1014 of 430.58Up
Larval carcass1989 2084 of 4128.57Up
S2 cells (growing)5 03 of 4 0.33Down
Whole fly15 14 of 4

Looking for CG1869-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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