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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18729-RA through 18771 annotations produced 1 hits



zwilch (zwilch):

Annotation Number : CG18729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061476
Gbrowse : chr3R:27036684-27039072 (-) // 100.0 //
Probeset : 1625024_at
Accessions : protein= NP_733421;, nucleotide= NM_170542;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay ///
FlyMine data for FBgn0061476.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 0.10Down
Head7 03 of 4 0.10Down
Eye3 12 of 4 0.03Down
Thoracicoabdominal ganglion11 13 of 4 0.10Down
Salivary gland23 61 of 4 0.21Down
Crop10 04 of 4 0.10Down
Midgut16 13 of 4 0.10Down
Tubule10 13 of 4 0.10Down
Hindgut14 04 of 4 0.10Down
Heart6 11 of 4 0.06Down
Fat body20 64 of 4 0.18Down
Ovary306 124 of 4 2.70Up
Testis121 34 of 4 1.10None
Male accessory glands14 23 of 4 0.10Down
Virgin spermatheca12 24 of 4 0.11Down
Mated spermatheca18 34 of 4 0.16Down
Adult carcass15 33 of 4 0.10Down
Larval CNS163 64 of 4 1.42Up
Larval Salivary gland20 14 of 4 0.18Down
Larval midgut16 13 of 4 0.14Down
Larval tubule21 14 of 4 0.20Down
Larval hindgut24 04 of 4 0.22Down
Larval fat body33 84 of 4 0.30Down
Larval trachea42 24 of 4 0.37Down
Larval carcass31 34 of 4 0.28Down
S2 cells (growing)219 64 of 4 1.91Up
Whole fly114 94 of 4

Looking for CG18729-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime