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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18730-RA through 18771 annotations produced 1 hits



Amylase /// Amylase (Amy-d /// Amy-p):

Annotation Number : CG18730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000078 /// FBgn0000079
Gbrowse : chr2R:13012303-13013799 (+) // 93.31 // /// chr2R:13006210-13007795 (-) // 100.0 //
Probeset : 1639374_s_at
Accessions : protein= NP_523768; /// NP_536346;, nucleotide= NM_079044; /// NM_080421;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004556 // alpha-amylase activity // inferred
FlyMine data for FBgn0000078 /// FBgn0000079.
BioGrid reports that CG18730 interacts with CG30011 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 30 of 4 0.00Down
Head349 1314 of 4 0.20Down
Eye99 164 of 4 0.06Down
Thoracicoabdominal ganglion30 42 of 4 0.00Down
Salivary gland10 40 of 4 0.01Down
Crop15 111 of 4 0.00Down
Midgut5872 1004 of 4 3.30Up
Tubule5 00 of 4 0.00Down
Hindgut12 20 of 4 0.00Down
Heart98 94 of 4 0.05Down
Fat body70 164 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis245 444 of 4 0.10Down
Male accessory glands46 23 of 4 0.00Down
Virgin spermatheca138 264 of 4 0.08Down
Mated spermatheca28 34 of 4 0.02Down
Adult carcass222 564 of 4 0.10Down
Larval CNS2 00 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut1025 3794 of 4 0.57None
Larval tubule1 00 of 4 0.00Down
Larval hindgut5 20 of 4 0.00Down
Larval fat body3 00 of 4 0.00Down
Larval trachea1 00 of 4 0.00Down
Larval carcass5 00 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly1799 2714 of 4

Looking for CG18730-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime