FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18740-RA through 18771 annotations produced 1 hits

moira (mor):

Annotation Number : CG18740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002783
Gbrowse : chr3R:11793854-11798631 (-) // 100.0 //
Probeset : 1640418_at
Accessions : protein= NP_524373;, nucleotide= NM_079649;
Pathway : DNA-dependent // inferred from direct assay /// 0048477 // oogenesis // non-traceable author statement"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
FlyMine data for FBgn0002783.
BDGP gene expression has embryonic in situ data for mor: 20 pix of staining in 24 body parts.
BioGrid reports that CG18740 interacts with CG1028 CG2189 CG1028 CG3938 CG3938 CG2189 CG4654 CG6376 CG32443 CG32443 CG5109 CG9375 CG9383 CG7467 CG7467 CG18085 CG2621 CG7958 CG2759 CG2759 CG7803 CG18740 CG7803 CG5942 .
TRiP has 3 RNAi stocks for FBgn0002783 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002783 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	276 ± 9	4 of 4	0.90	None
Head	158 ± 5	4 of 4	0.50	Down
Eye	160 ± 8	4 of 4	0.51	Down
Thoracicoabdominal ganglion	254 ± 2	4 of 4	0.80	Down
Salivary gland	374 ± 15	4 of 4	1.19	Up
Crop	162 ± 2	4 of 4	0.50	Down
Midgut	104 ± 5	4 of 4	0.30	Down
Tubule	186 ± 7	4 of 4	0.60	Down
Hindgut	140 ± 5	4 of 4	0.40	Down
Heart	108 ± 3	4 of 4	0.34	Down
Fat body	110 ± 3	4 of 4	0.35	Down
Ovary	729 ± 8	4 of 4	2.30	Up
Testis	76 ± 4	4 of 4	0.20	Down
Male accessory glands	349 ± 13	4 of 4	1.10	None
Virgin spermatheca	207 ± 4	4 of 4	0.66	Down
Mated spermatheca	236 ± 15	4 of 4	0.75	Down
Adult carcass	131 ± 6	4 of 4	0.40	Down
Larval CNS	698 ± 23	4 of 4	2.22	Up
Larval Salivary gland	489 ± 12	4 of 4	1.55	Up
Larval midgut	135 ± 2	4 of 4	0.43	Down
Larval tubule	174 ± 2	4 of 4	0.60	Down
Larval hindgut	232 ± 6	4 of 4	0.74	Down
Larval fat body	154 ± 9	4 of 4	0.50	Down
Larval trachea	420 ± 18	4 of 4	1.34	Up
Larval carcass	227 ± 4	4 of 4	0.72	Down
S2 cells (growing)	515 ± 24	4 of 4	1.64	Up
Whole fly	314 ± 17	4 of 4

Looking for CG18740-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720