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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18754-RA through 18771 annotations produced 1 hits



(CG18754):

Annotation Number : CG18754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:19510105-19511989 (+) // 100.0 //
Probeset : 1639169_at
Accessions : protein= NP_652652;, nucleotide= NM_144395;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopept
Homophila reports that CG18754 is a close match (4e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_076927), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
BioGrid reports that CG18754 interacts with CG5825 CG31811 CG8823 CG6521 CG5009 CG15112 CG17309 CG11486 CG4184 CG10571 CG32169 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head3 ± 00 of 4 0.60None
Eye4 ± 11 of 4 0.68None
Thoracicoabdominal ganglion7 ± 20 of 4 1.20None
Salivary gland15 ± 71 of 4 2.65None
Crop4 ± 10 of 4 0.80None
Midgut8 ± 00 of 4 1.40None
Tubule2 ± 00 of 4 0.50Down
Hindgut3 ± 00 of 4 0.60None
Heart3 ± 00 of 4 0.57None
Fat body9 ± 31 of 4 1.52None
Ovary4 ± 11 of 4 0.70None
Testis20 ± 14 of 4 3.50Up
Male accessory glands9 ± 01 of 4 1.60None
Virgin spermatheca6 ± 00 of 4 1.02None
Mated spermatheca5 ± 20 of 4 0.90None
Adult carcass14 ± 12 of 4 2.40Up
Larval CNS6 ± 13 of 4 1.12None
Larval Salivary gland5 ± 20 of 4 0.97None
Larval midgut6 ± 11 of 4 1.05None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut4 ± 10 of 4 0.80None
Larval fat body12 ± 22 of 4 2.00None
Larval trachea4 ± 22 of 4 0.71None
Larval carcass10 ± 03 of 4 1.71None
S2 cells (growing)12 ± 14 of 4 2.09Up
Whole fly5 ± 21 of 4

Looking for CG18754-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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