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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1877-RC through 18771 annotations produced 1 hits



dCullin1 (lin19):

Annotation Number : CG1877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015509
Gbrowse : chr2R:3804360-3808482 (+) // 100.0 //
Probeset : 1624407_s_at
Accessions : protein= NP_523655; /// NP_724621; /// NP_724622; /// NP_724623;, nucleotide= NM_078931; /// NM_165569; /// NM_165570; /// NM_165571;
Pathway : 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiqui
Interpro : 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation
FlyMine data for FBgn0015509.
BDGP gene expression has embryonic in situ data for lin19: 4 pix of staining in 1 body parts.
Homophila reports that CG1877 is a close match (5e-81) to human gene CUL4B;MRXHF2;MRXSC;SFM2 (NP_003579), a gene associated with Mental retardation syndrome, X-linked, Cabezas type, 300354 (3);Mental retardation-hypotonic facies syndrome, X-linked, 2, 300639 (3).
BioGrid reports that CG1877 interacts with CG2830 .
TRiP has 2 RNAi stocks for FBgn0015509 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain639 134 of 4 1.10None
Head463 174 of 4 0.80None
Eye593 184 of 4 1.06None
Thoracicoabdominal ganglion586 204 of 4 1.10None
Salivary gland394 134 of 4 0.71Down
Crop463 124 of 4 0.80None
Midgut304 154 of 4 0.50Down
Tubule432 124 of 4 0.80Down
Hindgut346 54 of 4 0.60Down
Heart295 44 of 4 0.53Down
Fat body394 304 of 4 0.71Down
Ovary1214 124 of 4 2.20Up
Testis139 14 of 4 0.30Down
Male accessory glands275 54 of 4 0.50Down
Virgin spermatheca597 274 of 4 1.07None
Mated spermatheca640 124 of 4 1.15None
Adult carcass347 104 of 4 0.60Down
Larval CNS627 274 of 4 1.13None
Larval Salivary gland382 94 of 4 0.69Down
Larval midgut414 214 of 4 0.74Down
Larval tubule730 94 of 4 1.30Up
Larval hindgut508 194 of 4 0.91None
Larval fat body474 314 of 4 0.90None
Larval trachea364 304 of 4 0.65Down
Larval carcass473 294 of 4 0.85None
S2 cells (growing)547 104 of 4 0.98None
Whole fly557 464 of 4

Looking for CG1877-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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