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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18780-RA through 18771 annotations produced 1 hits



Mediator complex subunit 20 (MED20):

Annotation Number : CG18780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013531
Gbrowse : chr2L:8071808-8072844 (-) // 100.0 //
Probeset : 1641105_at
Accessions : protein= NP_524663;, nucleotide= NM_079924;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0003899 // DNA-directed RNA polymerase a
FlyMine data for FBgn0013531.
BioGrid reports that CG18780 interacts with CG3880 CG7957 CG7957 .
TRiP has 1 RNAi stocks for FBgn0013531 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013531 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 24 of 4 0.60Down
Head43 14 of 4 0.50Down
Eye25 14 of 4 0.31Down
Thoracicoabdominal ganglion46 34 of 4 0.60Down
Salivary gland32 32 of 4 0.40Down
Crop50 24 of 4 0.60Down
Midgut53 04 of 4 0.70Down
Tubule39 14 of 4 0.50Down
Hindgut60 14 of 4 0.70Down
Heart25 24 of 4 0.31Down
Fat body25 74 of 4 0.31Down
Ovary163 34 of 4 2.00Up
Testis70 44 of 4 0.90None
Male accessory glands55 34 of 4 0.70Down
Virgin spermatheca25 14 of 4 0.32Down
Mated spermatheca32 34 of 4 0.40Down
Adult carcass36 04 of 4 0.40Down
Larval CNS120 84 of 4 1.49Up
Larval Salivary gland51 44 of 4 0.63Down
Larval midgut25 24 of 4 0.31Down
Larval tubule65 14 of 4 0.80Down
Larval hindgut36 14 of 4 0.44Down
Larval fat body43 04 of 4 0.50Down
Larval trachea55 94 of 4 0.68Down
Larval carcass27 24 of 4 0.34Down
S2 cells (growing)119 34 of 4 1.48Up
Whole fly81 44 of 4

Looking for CG18780-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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