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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18789-RA through 18771 annotations produced 1 hits



/// (CG18787 /// CG18789):

Annotation Number : CG18789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042125 /// FBgn0042127
Gbrowse : chr2L:11994065-11995428 (-) // 100.0 // /// chr2L:11997976-11999339 (-) // 99.54 //
Probeset : 1637473_s_at
Accessions : protein= NP_652664; /// NP_723704;, nucleotide= NM_144407; /// NM_164981;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0042125 /// FBgn0042127.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 0.50Down
Head62 44 of 4 0.50Down
Eye75 54 of 4 0.60Down
Thoracicoabdominal ganglion60 54 of 4 0.50Down
Salivary gland71 34 of 4 0.56Down
Crop111 34 of 4 0.90Down
Midgut62 24 of 4 0.50Down
Tubule59 34 of 4 0.50Down
Hindgut76 34 of 4 0.60Down
Heart71 34 of 4 0.57Down
Fat body83 64 of 4 0.66Down
Ovary260 44 of 4 2.10Up
Testis378 554 of 4 3.00Up
Male accessory glands42 44 of 4 0.30Down
Virgin spermatheca70 74 of 4 0.56Down
Mated spermatheca68 74 of 4 0.54Down
Adult carcass75 24 of 4 0.60Down
Larval CNS138 74 of 4 1.10None
Larval Salivary gland67 44 of 4 0.54Down
Larval midgut53 34 of 4 0.42Down
Larval tubule118 84 of 4 0.90None
Larval hindgut53 14 of 4 0.42Down
Larval fat body145 274 of 4 1.20None
Larval trachea81 14 of 4 0.64Down
Larval carcass61 54 of 4 0.49Down
S2 cells (growing)174 154 of 4 1.38Up
Whole fly126 44 of 4

Looking for CG18789-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime