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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18801-RA through 18771 annotations produced 1 hits



Ku80 (Ku80):

Annotation Number : CG18801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041627
Gbrowse : chr2L:15768511-15771280 (-) // 100.0 //
Probeset : 1625759_at
Accessions : protein= NP_609767;, nucleotide= NM_135923;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0017117 // single-stranded DNA-dependent ATP-dependent DNA
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inf
FlyMine data for FBgn0041627.
BioGrid reports that CG18801 interacts with CG5441 .
TRiP has 1 RNAi stocks for FBgn0041627 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041627 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 0.90None
Head22 ± 22 of 4 0.60Down
Eye10 ± 11 of 4 0.29Down
Thoracicoabdominal ganglion43 ± 24 of 4 1.20None
Salivary gland17 ± 20 of 4 0.50Down
Crop22 ± 42 of 4 0.60None
Midgut24 ± 51 of 4 0.70None
Tubule49 ± 64 of 4 1.40Up
Hindgut29 ± 24 of 4 0.80None
Heart16 ± 22 of 4 0.47Down
Fat body18 ± 30 of 4 0.52Down
Ovary68 ± 34 of 4 1.90Up
Testis60 ± 24 of 4 1.70Up
Male accessory glands23 ± 42 of 4 0.60None
Virgin spermatheca10 ± 10 of 4 0.29Down
Mated spermatheca13 ± 20 of 4 0.38Down
Adult carcass24 ± 20 of 4 0.70Down
Larval CNS51 ± 54 of 4 1.46Up
Larval Salivary gland22 ± 21 of 4 0.63Down
Larval midgut26 ± 30 of 4 0.75None
Larval tubule46 ± 24 of 4 1.30Up
Larval hindgut29 ± 03 of 4 0.83None
Larval fat body31 ± 43 of 4 0.90None
Larval trachea39 ± 34 of 4 1.13None
Larval carcass31 ± 13 of 4 0.88None
S2 cells (growing)97 ± 14 of 4 2.77Up
Whole fly35 ± 24 of 4

Looking for CG18801-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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