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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18802-RA through 18771 annotations produced 1 hits



alpha-mannosidase 2 (alpha-Man-II):

Annotation Number : CG18802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011740
Gbrowse : chr3R:5238270-5242986 (+) // 100.0 //
Probeset : 1626112_at
Accessions : protein= NP_524291;, nucleotide= NM_079567;
Pathway : 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // non-tracea
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0011740.
BDGP gene expression has embryonic in situ data for alpha-Man-II: 9 pix of staining in 1 body parts.
Homophila reports that CG18802 is a close match (3e-65) to human gene MAN2B1;MANB (NP_000519), a gene associated with Mannosidosis, alpha-, types I and II, 248500 (3).
BioGrid reports that CG18802 interacts with CG5501 CG32772 .
VDRC has 1 RNAi stocks for FBgn0011740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 44 of 4 1.90Up
Head117 24 of 4 1.10None
Eye146 84 of 4 1.38Up
Thoracicoabdominal ganglion195 54 of 4 1.80Up
Salivary gland79 14 of 4 0.75Down
Crop79 24 of 4 0.80Down
Midgut23 14 of 4 0.20Down
Tubule204 164 of 4 1.90Up
Hindgut48 24 of 4 0.50Down
Heart79 44 of 4 0.75Down
Fat body78 54 of 4 0.74Down
Ovary209 24 of 4 2.00Up
Testis100 24 of 4 1.00None
Male accessory glands628 334 of 4 5.90Up
Virgin spermatheca70 44 of 4 0.67Down
Mated spermatheca80 24 of 4 0.76Down
Adult carcass67 24 of 4 0.60Down
Larval CNS266 74 of 4 2.51Up
Larval Salivary gland107 34 of 4 1.01None
Larval midgut18 03 of 4 0.17Down
Larval tubule90 34 of 4 0.90None
Larval hindgut77 24 of 4 0.74Down
Larval fat body60 34 of 4 0.60Down
Larval trachea148 114 of 4 1.40Up
Larval carcass134 64 of 4 1.27Up
S2 cells (growing)150 44 of 4 1.42Up
Whole fly105 54 of 4

Looking for CG18802-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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