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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18814-RA through 18771 annotations produced 1 hits



(CG18814):

Annotation Number : CG18814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042137
Gbrowse : chr3L:16362975-16363943 (+) // 100.0 //
Probeset : 1629675_at
Accessions : protein= NP_650696; /// NP_652673;, nucleotide= NM_142439; /// NM_144416;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005811 // lipid particle // infe
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activit
FlyMine data for FBgn0042137.
Homophila reports that CG18814 is a close match (2e-23) to human gene (NP_000851), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0042137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 01 of 4 0.60None
Head5 ± 11 of 4 1.20None
Eye13 ± 14 of 4 3.02Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.90None
Salivary gland11 ± 30 of 4 2.53None
Crop3 ± 10 of 4 0.80None
Midgut2 ± 10 of 4 0.60None
Tubule92 ± 124 of 420.10Up
Hindgut5 ± 01 of 4 1.10None
Heart1 ± 00 of 4 0.22Down
Fat body5 ± 42 of 4 1.18None
Ovary2 ± 00 of 4 0.60None
Testis4 ± 01 of 4 1.00None
Male accessory glands3 ± 10 of 4 0.80None
Virgin spermatheca4 ± 00 of 4 0.87None
Mated spermatheca5 ± 00 of 4 1.08None
Adult carcass9 ± 30 of 4 2.10None
Larval CNS3 ± 11 of 4 0.72None
Larval Salivary gland4 ± 11 of 4 1.05None
Larval midgut5 ± 10 of 4 1.16None
Larval tubule49 ± 64 of 410.80Up
Larval hindgut5 ± 11 of 4 1.27None
Larval fat body5 ± 10 of 4 1.20None
Larval trachea4 ± 21 of 4 0.90None
Larval carcass5 ± 00 of 4 1.10None
S2 cells (growing)2 ± 00 of 4 0.51None
Whole fly4 ± 01 of 4

Looking for CG18814-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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