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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18815-RA through 18771 annotations produced 1 hits



Acyl-protein Thioesterase 1 (CG18815):

Annotation Number : CG18815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042138
Gbrowse : chr3L:11621169-11623099 (+) // 100.0 //
Probeset : 1629759_at
Accessions : protein= NP_652674; /// NP_996055; /// NP_996056;, nucleotide= NM_144417; /// NM_206333; /// NM_206334;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0042138.
BDGP gene expression has embryonic in situ data for CG18815: 4 pix of staining in 1 body parts.
BioGrid reports that CG18815 interacts with CG4617 .
VDRC has 2 RNAi stocks for FBgn0042138 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1059 154 of 4 2.00Up
Head1126 274 of 4 2.10Up
Eye1967 594 of 4 3.67Up
Thoracicoabdominal ganglion1095 474 of 4 2.00Up
Salivary gland911 64 of 4 1.70Up
Crop1176 524 of 4 2.20Up
Midgut1103 324 of 4 2.10Up
Tubule820 524 of 4 1.50Up
Hindgut877 184 of 4 1.60Up
Heart1731 1104 of 4 3.23Up
Fat body2327 1204 of 4 4.34Up
Ovary593 294 of 4 1.10None
Testis349 64 of 4 0.70Down
Male accessory glands471 94 of 4 0.90None
Virgin spermatheca1744 404 of 4 3.25Up
Mated spermatheca1679 884 of 4 3.13Up
Adult carcass1209 324 of 4 2.30Up
Larval CNS752 634 of 4 1.40Up
Larval Salivary gland573 214 of 4 1.07None
Larval midgut674 544 of 4 1.26None
Larval tubule504 264 of 4 0.90None
Larval hindgut614 154 of 4 1.15None
Larval fat body582 394 of 4 1.10None
Larval trachea431 414 of 4 0.80Down
Larval carcass494 614 of 4 0.92None
S2 cells (growing)508 74 of 4 0.95None
Whole fly536 264 of 4

Looking for CG18815-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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