FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18817-RA through 18771 annotations produced 1 hits

tetraspanin 42E (Tsp42Ea):

Annotation Number : CG18817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029508
Gbrowse : chrUextra:146587-147885 (+) // 80.98 // /// chr2R:2880180-2885478 (+) // 100.0 // /// chr2R:2890468-2891766 (+) // 80.98 //
Probeset : 1630145_s_at
Accessions : protein= NP_525012; /// NP_652646; /// NP_724524;, nucleotide= NM_080273; /// NM_144389; /// NM_165502;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0029508.
BDGP gene expression has embryonic in situ data for Tsp42Ea: 25 pix of staining in 15 body parts.
Homophila reports that CG18817 is a close match (3e-13) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0029508 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029508 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	203 ± 10	4 of 4	0.60	Down
Head	1214 ± 56	4 of 4	3.70	Up
Eye	3079 ± 103	4 of 4	9.39	Up
Thoracicoabdominal ganglion	268 ± 6	4 of 4	0.80	Down
Salivary gland	1250 ± 28	4 of 4	3.81	Up
Crop	2583 ± 80	4 of 4	7.90	Up
Midgut	144 ± 8	4 of 4	0.40	Down
Tubule	449 ± 99	4 of 4	1.40	None
Hindgut	1703 ± 58	4 of 4	5.20	Up
Heart	153 ± 9	4 of 4	0.47	Down
Fat body	98 ± 14	4 of 4	0.30	Down
Ovary	196 ± 10	4 of 4	0.60	Down
Testis	119 ± 2	4 of 4	0.40	Down
Male accessory glands	752 ± 50	4 of 4	2.30	Up
Virgin spermatheca	378 ± 19	4 of 4	1.15	None
Mated spermatheca	524 ± 39	4 of 4	1.60	Up
Adult carcass	576 ± 10	4 of 4	1.80	Up
Larval CNS	83 ± 18	4 of 4	0.26	Down
Larval Salivary gland	571 ± 33	4 of 4	1.74	Up
Larval midgut	66 ± 6	4 of 4	0.20	Down
Larval tubule	92 ± 6	4 of 4	0.30	Down
Larval hindgut	1057 ± 31	4 of 4	3.23	Up
Larval fat body	18 ± 3	3 of 4	0.10	Down
Larval trachea	479 ± 120	4 of 4	1.46	None
Larval carcass	858 ± 67	4 of 4	2.62	Up
S2 cells (growing)	136 ± 11	4 of 4	0.42	Down
Whole fly	327 ± 11	4 of 4

Looking for CG18817-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720