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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18823-RA through 18771 annotations produced 1 hits



(CG18823):

Annotation Number : CG18823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042146
Gbrowse : chrX:884614-884935 (+) // 100.0 //
Probeset : 1627174_at
Accessions : protein= NP_659571;, nucleotide= NM_145103;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0042146.
VDRC has 4 RNAi stocks for FBgn0042146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.90None
Head5 ± 20 of 4 1.30None
Eye1 ± 00 of 4 0.44None
Thoracicoabdominal ganglion5 ± 10 of 4 1.40None
Salivary gland12 ± 40 of 4 3.13None
Crop9 ± 10 of 4 2.20None
Midgut5 ± 10 of 4 1.20None
Tubule5 ± 00 of 4 1.40Up
Hindgut7 ± 20 of 4 1.70None
Heart2 ± 10 of 4 0.62None
Fat body5 ± 40 of 4 1.27None
Ovary2 ± 00 of 4 0.50None
Testis28 ± 14 of 4 7.00Up
Male accessory glands4 ± 20 of 4 1.20None
Virgin spermatheca7 ± 10 of 4 1.74None
Mated spermatheca11 ± 30 of 4 2.82None
Adult carcass9 ± 30 of 4 2.30None
Larval CNS3 ± 10 of 4 0.78None
Larval Salivary gland5 ± 20 of 4 1.43None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut5 ± 20 of 4 1.30None
Larval fat body5 ± 20 of 4 1.40None
Larval trachea1 ± 00 of 4 0.28None
Larval carcass9 ± 20 of 4 2.30None
S2 cells (growing)2 ± 00 of 4 0.52None
Whole fly4 ± 10 of 4

Looking for CG18823-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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